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AT3G56260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 20 Blast hits to 19 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 10; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSXMeggNOG:ENOG41108DSEMBL:AL163763EMBL:CP002686
EnsemblPlants:AT3G56260EnsemblPlants:AT3G56260.1entrez:824792ExpressionAtlas:Q9LYL7
GeneID:824792Gramene:AT3G56260.1HOGENOM:HOG000153177PIR:T47743
Proteomes:UP000006548RefSeq:NP_191185.1TAIR:AT3G56260UniGene:At.34951
UniProt:Q9LYL7
Coordinates (TAIR10) chr3:-:20868199..20868773
Molecular Weight (calculated) 19225.60 Da
IEP (calculated) 10.39
GRAVY (calculated) -0.84
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLQSMKRDP PTMAEPPYHS YGSQGQEHPK TTSAPIPLFL CLSHRRPHTT PPGFCRHQGR KASDLRRSNH GSKKTASSSF SWSSTSSSSS FSSSPPHSLK
101: KRMSHDKKSP LLYANYEEDE LRSSPTSTLC CSNGGRLGCS SSMGSVTRAL FSGSMEGMKR HETTGKALII SDMNKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)