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AT3G56250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.866
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 109 Blast hits to 83 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 18; Fungi - 20; Plants - 21; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J7FReggNOG:ENOG410Z3A5EMBL:AL163763EMBL:CP002686
EnsemblPlants:AT3G56250EnsemblPlants:AT3G56250.1entrez:824791GeneID:824791
Gramene:AT3G56250.1hmmpanther:PTHR35740hmmpanther:PTHR35740:SF1HOGENOM:HOG000153178
KEGG:ath:AT3G56250OMA:AACQDYIPhylomeDB:Q9LYL8PIR:T47742
Proteomes:UP000006548RefSeq:NP_191184.1TAIR:AT3G56250UniGene:At.34952
UniProt:Q9LYL8
Coordinates (TAIR10) chr3:+:20866120..20867840
Molecular Weight (calculated) 24300.40 Da
IEP (calculated) 10.60
GRAVY (calculated) -0.91
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAPRSVGGR IQRKPLADCT NTVSRSSQQS SSSVKFANPS LTSSLKRLVE QTTLKEKPKD VNTSATAPEI ASRPITTDVR PVTRRMSADL ASPASAPSRP
101: QTSRSDMGVS DKDFTEPWSV YTVRRKASGQ KRSKDASSST SAAARIRLDL SSSSGKKTRQ ASENKKKTLK VAPKKRQRTV KQEKEDPVSA ACQDYIEKQK
201: AYFAEIDAFE LPVEEVSNSD SD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)