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AT3G56230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.817
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BTB/POZ domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G01640.2); Has 5225 Blast hits to 5141 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 3910; Fungi - 3; Plants - 1048; Viruses - 41; Other Eukaryotes - 223 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:AK176299EMBL:AL163763EMBL:BT012360EMBL:CP002686EnsemblPlants:AT3G56230
EnsemblPlants:AT3G56230.1entrez:824789GeneID:824789Genevisible:Q9LYL9GO:GO:0016567Gramene:AT3G56230.1hmmpanther:PTHR24413
hmmpanther:PTHR24413:SF0HOGENOM:HOG000029690InParanoid:Q9LYL9InterPro:IPR000210InterPro:IPR011333KEGG:ath:AT3G56230KO:K10523
OMA:TICAACYPaxDb:Q9LYL9Pfam:PF00651Pfam:Q9LYL9Pfscan:PS50097PhylomeDB:Q9LYL9PIR:T47740
PRIDE:Q9LYL9PRO:PR:Q9LYL9PROSITE:PS50097ProteinModelPortal:Q9LYL9Proteomes:UP000006548RefSeq:NP_191182.1SMART:SM00225
SMR:Q9LYL9STRING:3702.AT3G56230.1SUPFAM:SSF54695TAIR:AT3G56230UniGene:At.43588UniPathway:UPA00143UniProt:Q9LYL9
Coordinates (TAIR10) chr3:-:20860899..20862135
Molecular Weight (calculated) 31765.10 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.33
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MDCSICTTMP SILRPPRNTI CGSCYEGART TIALLKKLEG SKEDRHDKSN HNSTINNGSS ISSSPLFSCE PQPLEKVIKW MKNMKETEEE QKKRIVFLSS
101: FVSGFKEQLH ADILLKPGDD GPPIPAHRAL LASKSEIFKN ILDSDGCKTA PEYAITLQEL NSEQLQALLE FLYTGTLASD KLEKNVYALF IAADKYMIHY
201: LQELCEQYML SSLDISSVLN VLDVSDLGSS KTLKEACVGF VVRNMDDVVF SDKYEPFSQK NQHLCVEITR AFLMETRSKR RD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)