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AT3G56200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.775
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Encodes a putative amino acid transporter.
Computational
Description (TAIR10)
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G40420.1); Has 4348 Blast hits to 4307 proteins in 431 species: Archae - 11; Bacteria - 411; Metazoa - 1511; Fungi - 660; Plants - 875; Viruses - 3; Other Eukaryotes - 877 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0814eggNOG:KOG1305EMBL:AL163763EMBL:AY094388EMBL:CP002686EnsemblPlants:AT3G56200EnsemblPlants:AT3G56200.1
entrez:824786GeneID:824786GO:GO:0016021Gramene:AT3G56200.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF323HOGENOM:HOG000238856
InterPro:IPR013057KEGG:ath:AT3G56200OMA:WWNTRIFPfam:PF01490PhylomeDB:Q9LYM2PIR:T47737PRO:PR:Q9LYM2
Proteomes:UP000006548Reactome:R-ATH-210455Reactome:R-ATH-210500Reactome:R-ATH-352230RefSeq:NP_191179.1STRING:3702.AT3G56200.1TAIR:AT3G56200
TMHMM:TMhelixUniGene:At.27645UniProt:Q9LYM2
Coordinates (TAIR10) chr3:+:20850087..20851779
Molecular Weight (calculated) 47107.40 Da
IEP (calculated) 8.59
GRAVY (calculated) 0.80
Length 435 amino acids
Sequence (TAIR10)
(BLAST)
001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)