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AT3G56150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:18433157 (2008): nucleus
  • PMID:18433157 (2008): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : eukaryotic translation initiation factor 3C
Curator
Summary (TAIR10)
member of eIF3c - eukaryotic initiation factor 3c
Computational
Description (TAIR10)
eukaryotic translation initiation factor 3C (EIF3C); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717), Eukaryotic translation initiation factor 3 subunit 8, N-terminal (InterPro:IPR008905); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3 subunit C2 (TAIR:AT3G22860.1); Has 10199 Blast hits to 6703 proteins in 565 species: Archae - 12; Bacteria - 1147; Metazoa - 3521; Fungi - 1145; Plants - 1081; Viruses - 87; Other Eukaryotes - 3206 (source: NCBI BLink).
Protein Annotations
BioGrid:10097eggNOG:ENOG410XRU3eggNOG:KOG1076EMBL:AF040102EMBL:AL163763EMBL:AY064006EMBL:BT001961
EMBL:CP002686EnsemblPlants:AT3G56150EnsemblPlants:AT3G56150.1EnsemblPlants:AT3G56150.2entrez:824781Gene3D:1.10.10.10GeneID:824781
Genevisible:O49160GO:GO:0001731GO:GO:0003743GO:GO:0005634GO:GO:0005829GO:GO:0005852GO:GO:0006413
GO:GO:0006446GO:GO:0016282GO:GO:0031369GO:GO:0033290Gramene:AT3G56150.1Gramene:AT3G56150.2HAMAP:MF_03002
hmmpanther:PTHR13937hmmpanther:PTHR13937:SF0HOGENOM:HOG000029414InParanoid:O49160IntAct:O49160InterPro:IPR000717InterPro:IPR008905
InterPro:IPR011991InterPro:IPR027516iPTMnet:O49160KEGG:ath:AT3G56150KO:K03252MINT:MINT-7980051ncoils:Coil
OMA:INEMWEDPaxDb:O49160Pfam:O49160Pfam:PF01399Pfam:PF05470PhylomeDB:O49160PIR:T47732
PIR:T50773PRIDE:O49160PRO:PR:O49160ProteinModelPortal:O49160Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-72689
Reactome:R-ATH-72695Reactome:R-ATH-72702RefSeq:NP_001190102.1RefSeq:NP_191174.1SMART:SM00088SMR:O49160STRING:3702.AT3G56150.1
SUPFAM:SSF46785TAIR:AT3G56150tair10-symbols:ATEIF3C-1tair10-symbols:ATTIF3C1tair10-symbols:EIF3Ctair10-symbols:EIF3C-1tair10-symbols:TIF3C1
UniGene:At.5061UniProt:O49160
Coordinates (TAIR10) chr3:-:20833790..20836820
Molecular Weight (calculated) 102955.00 Da
IEP (calculated) 5.00
GRAVY (calculated) -0.69
Length 900 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)