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AT3G56130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : biotin/lipoyl attachment domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
biotin/lipoyl attachment domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G52670.1); Has 2050 Blast hits to 2050 proteins in 795 species: Archae - 23; Bacteria - 1613; Metazoa - 0; Fungi - 2; Plants - 110; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
Protein Annotations
DIP:DIP-58510NeggNOG:ENOG410IVZUeggNOG:ENOG41120W7EMBL:AF378871EMBL:AY050468EMBL:CP002686EnsemblPlants:AT3G56130
EnsemblPlants:AT3G56130.1entrez:824779ExpressionAtlas:Q93W03GeneID:824779GO:GO:0009507Gramene:AT3G56130.1hmmpanther:PTHR18866
hmmpanther:PTHR18866:SF99HOGENOM:HOG000006206IntAct:Q93W03InterPro:IPR000089InterPro:IPR008979InterPro:IPR011053OMA:ACKEGDI
Pfam:PF00364PhylomeDB:Q93W03ProMEX:Q93W03Proteomes:UP000006548RefSeq:NP_567035.1STRING:3702.AT3G56130.1SUPFAM:SSF49785
SUPFAM:SSF51230TAIR:AT3G56130UniGene:At.25224UniProt:Q93W03
Coordinates (TAIR10) chr3:+:20826852..20829007
Molecular Weight (calculated) 29577.90 Da
IEP (calculated) 9.10
GRAVY (calculated) -0.32
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSAALGSL HQTLGSAINS QSEVHSLSGN WSASGNSCVP RWRLSNRNSN YRLVLRAKAA KSSTTTISDG SSDASVSDGK KTVRRITFPK EVEALVHEMC
101: DETEVAVLQL KVGDFEMNLK RKIGAATNPI PVADISPTVA PPIPSEPMNK SASSAPSPSQ AKPSSEKVSP FKNTSYGKPA KLAALEASGS TNYVLVTSPA
201: VGKFQRSRTV KGKKQSPSCK EGDAIKEGQV IGYLHQLGTE LPVTSDVAGE VLKLLSDDGD SVGYGDPLVA VLPSFHDINI Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)