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AT3G56070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : rotamase cyclophilin 2
Curator
Summary (TAIR10)
rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction.
Computational
Description (TAIR10)
rotamase cyclophilin 2 (ROC2); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, cyclosporin A binding; INVOLVED IN: protein folding, response to cadmium ion, signal transduction; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 3 (TAIR:AT2G16600.1); Has 16518 Blast hits to 16486 proteins in 2631 species: Archae - 108; Bacteria - 6748; Metazoa - 2914; Fungi - 1377; Plants - 1262; Viruses - 4; Other Eukaryotes - 4105 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G56070-MONOMERBioCyc:ARA:GQT-1558-MONOMEREC:5.2.1.8eggNOG:COG0652eggNOG:KOG0865EMBL:AL163763EMBL:AY072128
EMBL:AY096697EMBL:CP002686EMBL:U31370EMBL:U40400EnsemblPlants:AT3G56070EnsemblPlants:AT3G56070.1EnsemblPlants:AT3G56070.2
entrez:824773Gene3D:2.40.100.10GeneID:824773Genevisible:Q38867GO:GO:0003755GO:GO:0005739GO:GO:0005794
GO:GO:0005829GO:GO:0006457GO:GO:0007165GO:GO:0016018GO:GO:0046686Gramene:AT3G56070.1Gramene:AT3G56070.2
hmmpanther:PTHR11071hmmpanther:PTHR11071:SF252HOGENOM:HOG000065981InParanoid:Q38867IntAct:Q38867InterPro:IPR002130InterPro:IPR020892
InterPro:IPR024936InterPro:IPR029000KEGG:ath:AT3G56070KO:K01802OMA:AGKALHYPANTHER:PTHR11071PaxDb:Q38867
Pfam:PF00160Pfam:Q38867Pfscan:PS50072PhylomeDB:Q38867PIR:T47724PIR:T50767PIRSF:PIRSF001467
PRIDE:Q38867PRINTS:PR00153PRO:PR:Q38867PROSITE:PS00170PROSITE:PS50072ProteinModelPortal:Q38867Proteomes:UP000006548
Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210RefSeq:NP_001078301.1RefSeq:NP_191166.1scanprosite:PS00170SMR:Q38867
STRING:3702.AT3G56070.1SUPFAM:SSF50891SwissPalm:Q38867TAIR:AT3G56070tair10-symbols:ROC2UniGene:At.34965UniProt:Q38867
Coordinates (TAIR10) chr3:-:20806987..20807517
Molecular Weight (calculated) 18921.60 Da
IEP (calculated) 7.97
GRAVY (calculated) -0.29
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MANPKVFFDI LIGKMKAGRV VMELFADVTP RTANNFRALC TGENGIGKAG KALHYKGSAF HRIIPGFMCQ GGDFTRGNGT GGESIYGSKF EDENFKLKHT
101: GPGILSMANS GPNTNGSQFF ICTEKTSWLD GKHVVFGKVV DGYNVVKAME DVGSDMGNPS ERVVIEDCGE LKNPSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)