suba logo
AT3G56070.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:22430844 (2012): Golgi
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : rotamase cyclophilin 2
Curator
Summary (TAIR10)
rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction.
Computational
Description (TAIR10)
rotamase cyclophilin 2 (ROC2); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, cyclosporin A binding; INVOLVED IN: protein folding, response to cadmium ion, signal transduction; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 3 (TAIR:AT2G16600.1); Has 16518 Blast hits to 16486 proteins in 2631 species: Archae - 108; Bacteria - 6748; Metazoa - 2914; Fungi - 1377; Plants - 1262; Viruses - 4; Other Eukaryotes - 4105 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G56070-MONOMERBioCyc:ARA:GQT-1558-MONOMEREC:5.2.1.8eggNOG:COG0652
eggNOG:KOG0865EMBL:AL163763EMBL:AY072128EMBL:AY096697
EMBL:CP002686EMBL:U31370EMBL:U40400EnsemblPlants:AT3G56070
EnsemblPlants:AT3G56070.1EnsemblPlants:AT3G56070.2entrez:824773Gene3D:2.40.100.10
GeneID:824773Genevisible:Q38867GO:GO:0003755GO:GO:0005739
GO:GO:0005794GO:GO:0005829GO:GO:0006457GO:GO:0007165
GO:GO:0016018GO:GO:0046686Gramene:AT3G56070.1Gramene:AT3G56070.2
hmmpanther:PTHR11071hmmpanther:PTHR11071:SF252HOGENOM:HOG000065981InParanoid:Q38867
IntAct:Q38867InterPro:IPR002130InterPro:IPR020892InterPro:IPR024936
InterPro:IPR029000KEGG:ath:AT3G56070KO:K01802OMA:AGKALHY
PANTHER:PTHR11071PaxDb:Q38867Pfam:PF00160Pfam:Q38867
Pfscan:PS50072PhylomeDB:Q38867PIR:T47724PIR:T50767
PIRSF:PIRSF001467PRIDE:Q38867PRINTS:PR00153PRO:PR:Q38867
PROSITE:PS00170PROSITE:PS50072ProteinModelPortal:Q38867Proteomes:UP000006548
Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210RefSeq:NP_001078301.1
RefSeq:NP_191166.1scanprosite:PS00170SMR:Q38867STRING:3702.AT3G56070.1
SUPFAM:SSF50891SwissPalm:Q38867TAIR:AT3G56070tair10-symbols:ROC2
UniGene:At.34965UniProt:Q38867
Coordinates (TAIR10) chr3:-:20806987..20807517
Molecular Weight (calculated) 18921.60 Da
IEP (calculated) 7.97
GRAVY (calculated) -0.29
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MANPKVFFDI LIGKMKAGRV VMELFADVTP RTANNFRALC TGENGIGKAG KALHYKGSAF HRIIPGFMCQ GGDFTRGNGT GGESIYGSKF EDENFKLKHT
101: GPGILSMANS GPNTNGSQFF ICTEKTSWLD GKHVVFGKVV DGYNVVKAME DVGSDMGNPS ERVVIEDCGE LKNPSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)