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AT3G55970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : jasmonate-regulated gene 21
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
jasmonate-regulated gene 21 (JRG21); FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8809 Blast hits to 8750 proteins in 1005 species: Archae - 0; Bacteria - 1115; Metazoa - 109; Fungi - 1073; Plants - 4993; Viruses - 0; Other Eukaryotes - 1519 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G55970-MONOMEReggNOG:COG3491eggNOG:KOG0143EMBL:AJ298225EMBL:AK229205EMBL:AL163832EMBL:CP002686
EnsemblPlants:AT3G55970EnsemblPlants:AT3G55970.1entrez:824763Gene3D:2.60.120.330GeneID:824763GO:GO:0005506GO:GO:0051213
Gramene:AT3G55970.1gramene_pathway:1.14.11.9gramene_pathway:PWY-5152gramene_pathway:PWY1F-823gramene_pathway:PWY1F-FLAVSYNhmmpanther:PTHR10209hmmpanther:PTHR10209:SF155
HOGENOM:HOG000276735InterPro:IPR002283InterPro:IPR005123InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT3G55970OMA:LEDYCKE
Pfam:PF03171Pfam:PF14226Pfscan:PS51471PhylomeDB:Q9LY48PIR:T49209PRINTS:PR00682PROSITE:PS51471
Proteomes:UP000006548RefSeq:NP_191156.1SMR:Q9LY48STRING:3702.AT3G55970.1SUPFAM:SSF51197TAIR:AT3G55970tair10-symbols:ATJRG21
tair10-symbols:JRG21UniGene:At.5208UniProt:Q9LY48
Coordinates (TAIR10) chr3:-:20766970..20769264
Molecular Weight (calculated) 41444.50 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.51
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MNIFQDWPEP IVRVQSLSES NLGAIPNRYV KPLSQRPNIT PHNKHNPQTT TIPIIDLGRL YTDDLTLQAK TLDEISKACR ELGFFQVVNH GMSPQLMDQA
101: KATWREFFNL PMELKNMHAN SPKTYEGYGS RLGVEKGAIL DWSDYYYLHY QPSSLKDYTK WPSLPLHCRE ILEDYCKEMV KLCENLMKIL SKNLGLQEDR
201: LQNAFGGKEE SGGCLRVNYY PKCPQPELTL GISPHSDPGG LTILLPDEQV ASLQVRGSDD AWITVEPAPH AFIVNMGDQI QMLSNSIYKS VEHRVIVNPE
301: NERLSLAFFY NPKGNVPIEP LKELVTVDSP ALYSSTTYDR YRQFIRTQGP RSKCHIDELK SPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)