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AT3G55960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.808
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G29780.1); Has 2169 Blast hits to 2162 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 723; Fungi - 425; Plants - 384; Viruses - 0; Other Eukaryotes - 637 (source: NCBI BLink).
Protein Annotations
DNASU:824762eggNOG:COG5190eggNOG:KOG1605EMBL:AL163832EMBL:AY085070EMBL:AY099806EMBL:BT000304
EMBL:CP002686EnsemblPlants:AT3G55960EnsemblPlants:AT3G55960.1entrez:824762Gene3D:3.40.50.1000GeneID:824762GO:GO:0007623
GO:GO:0016791Gramene:AT3G55960.1hmmpanther:PTHR12210hmmpanther:PTHR12210:SF57HOGENOM:HOG000241487InterPro:IPR004274InterPro:IPR011948
InterPro:IPR023214KEGG:ath:AT3G55960KO:K15731OMA:CITFSAGPfam:PF03031Pfscan:PS50969PhylomeDB:Q9LY49
PIR:T49208PROSITE:PS50969Proteomes:UP000006548RefSeq:NP_191155.1SMART:SM00577SMR:Q9LY49STRING:3702.AT3G55960.1
SUPFAM:SSF56784TAIR:AT3G55960TIGRfam:TIGR02251TIGRFAMs:TIGR02251UniGene:At.23489UniGene:At.67833UniProt:Q9LY49
Coordinates (TAIR10) chr3:-:20760797..20762892
Molecular Weight (calculated) 34515.20 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.18
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MAELTQADVV YSPRSFQVWK TLVNWLAFFY QIFLQILRAV GYHPLLSSSA KASADGFKPL PAIELLDRAS ESPTTVEIAA TTTSDSCSDG ARSRFQRLKV
101: VLDLDETLVC AYETSSLPAA LRNQAIEAGL KWFELECLST DKEYDGKPKI NYVTVFERPG LHEFLEQLSE FADLILFTAG LEGYARPLVD RIDTRKVLTN
201: RLYRPSTVST QYRDHVKDLL STSKNMCRTV IVDNNPFSFL LQPSNGIPCI AFSAGQPNDT QLLDVILPLL KQLSEEDDVR PTLYDRFRMP EWFEKQGIPP
301: SCWKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)