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AT3G55850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Amidohydrolase family
Curator
Summary (TAIR10)
Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 1 only in the first few N-terminal amino acids.
Computational
Description (TAIR10)
LAF3 ISOFORM 2 (LAF3 ISF2); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: biological_process unknown; LOCATED IN: perinuclear region of cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 3 (InterPro:IPR013108), Metal-dependent hydrolase, composite domain (InterPro:IPR011059); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1574eggNOG:ENOG410IIBXEMBL:CP002686EnsemblPlants:AT3G55850
EnsemblPlants:AT3G55850.1entrez:824751ExpressionAtlas:F4IY42Gene3D:2.30.40.10
GeneID:824751GO:GO:0016810Gramene:AT3G55850.1hmmpanther:PTHR22642
hmmpanther:PTHR22642:SF2InterPro:IPR011059InterPro:IPR013108InterPro:IPR032466
KEGG:ath:AT3G55850PaxDb:F4IY42Pfam:PF07969PRIDE:F4IY42
ProteinModelPortal:F4IY42Proteomes:UP000006548RefSeq:NP_567027.2SMR:F4IY42
STRING:3702.AT3G55850.2SUPFAM:SSF51338SUPFAM:SSF51556TAIR:AT3G55850
tair10-symbols:LAF3tair10-symbols:LAF3 ISF2TMHMM:TMhelixUniGene:At.26273
UniProt:F4IY42
Coordinates (TAIR10) chr3:-:20721866..20725489
Molecular Weight (calculated) 62946.60 Da
IEP (calculated) 5.34
GRAVY (calculated) 0.07
Length 576 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLFVIVSAA VFLLISVAYL PLLNDLYWST LKSLTPPAGI VADLLVTNGT IFTSDSSLPF ADSMAIRNGR ILKVGSFATL KGFIGDGTME VNLEGKIVVP
101: GLIDSHVHLI SGGLQMAQVG LRGVSQKDEF CKMVKDAVQN AKEGSWILGG GWNNDFWGGE LPSASWIDEI SPRNPVWLIR MDGHMALANS LALKIAGVIS
201: LTEDPVGGTI MRMPSGEPTG LLIDAAMELV TPWVKEISVD ERREALFRAS KYALTRGVTT VIDLGRYFPG TTDELSWKDF QDVYLYADSS KKMMIRTCLF
301: FPITTWSRLL DLKLQKGSVL SEWLYLGGVK AFIDGSLGSN SALFYEEYID TPNNYGLEVM DPEKLSNFTM AADKSGLQVA IHAIGDKAND MILDMYESVA
401: AANGDRDRRF RIEHAQHLAP GSANRFGQLH IVASVQPDHL LDDADSVAKK LGSERAVKES YLFQSLLNGN ALLALGSDWP VADINPLHSI RTAVKRIPPK
501: WDHAWIPSER ISFTDALIAQ TISAARAAFL DHHLGSLSPG KLADFVILST NSWDEFSKDV SASVLATYVG GKQLYP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)