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AT3G55830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17426055 (2007): Golgi Golgi apparatus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein
Curator
Summary (TAIR10)
A member of the Glycosyltransferase Family 64, homologous to Poplar cambium-expressed GT64 gene. The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion, thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant.
Computational
Description (TAIR10)
ECTOPICALLY PARTING CELLS (EPC1); CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 47 (TAIR:AT5G04500.1); Has 655 Blast hits to 655 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 500; Fungi - 8; Plants - 105; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G55830-MONOMERCAZy:GT64EC:2.4.1.-eggNOG:ENOG410XQYVeggNOG:KOG1022EMBL:AK228499EMBL:AL163832
EMBL:CP002686EMBL:KJ138787EnsemblPlants:AT3G55830EnsemblPlants:AT3G55830.1entrez:824749Gene3D:3.90.550.10GeneID:824749
Genevisible:Q9LY62GO:GO:0000139GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0006024GO:GO:0006486
GO:GO:0007275GO:GO:0009737GO:GO:0009738GO:GO:0010087GO:GO:0010401GO:GO:0015012GO:GO:0016021
GO:GO:0016337GO:GO:0035251GO:GO:0046872Gramene:AT3G55830.1hmmpanther:PTHR11062hmmpanther:PTHR11062:SF103HOGENOM:HOG000242058
InParanoid:Q9LY62InterPro:IPR015338InterPro:IPR029044KEGG:ath:AT3G55830OMA:WHRAEHAPaxDb:Q9LY62Pfam:PF09258
Pfam:Q9LY62PhylomeDB:Q9LY62PIR:T49195PRIDE:Q9LY62PRO:PR:Q9LY62ProteinModelPortal:Q9LY62Proteomes:UP000006548
RefSeq:NP_191142.1SMR:Q9LY62STRING:3702.AT3G55830.1SUPFAM:SSF53448TAIR:AT3G55830tair10-symbols:EPC1TMHMM:TMhelix
UniGene:At.19788UniGene:At.70251UniPathway:UPA00378UniProt:Q9LY62
Coordinates (TAIR10) chr3:+:20715101..20717133
Molecular Weight (calculated) 38301.80 Da
IEP (calculated) 9.59
GRAVY (calculated) -0.29
Length 334 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGGEVSKEM GACSLAYRRG DQKLRKFVTA RSTKFLLFCC IAFVLVTIVC RSSRPWVNSS IAVADRISGS RKGYTLLMNT WKRYDLLKKS VSHYASCSRL
101: DSIHIVWSEP NPPSESLKEY LHNVLKKKTR DGHEVELRFD INKEDSLNNR FKEIKDLKTD AVFSIDDDII FPCHTVDFAF NVWESAPDTM VGFVPRVHWP
201: EKSNDKANYY TYSGWWSVWW SGTYSMVLSK AAFFHKKYLS LYTNSMPASI REFTTKNRNC EDIAMSFLIA NATNAPAIWV KGKIYEIGST GISSIGGHTE
301: KRTHCVNRFV AEFGKMPLVY TSMKAVDSRN LWFW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)