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AT3G55770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.874
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GATA type zinc finger transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1); Has 5098 Blast hits to 3614 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 4118; Fungi - 82; Plants - 503; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).
Protein Annotations
BioGrid:10059EMBL:AK317129EMBL:AK317349EMBL:AK317444EMBL:AL161667EMBL:AY063924EMBL:AY084361
EMBL:AY091249EMBL:CP002686EnsemblPlants:AT3G55770EnsemblPlants:AT3G55770.1EnsemblPlants:AT3G55770.2EnsemblPlants:AT3G55770.3EnsemblPlants:AT3G55770.4
EnsemblPlants:AT3G55770.5EnsemblPlants:AT3G55770.7entrez:824743ExpressionAtlas:Q9M047Gene3D:2.10.110.10GeneID:824743Genevisible:Q9M047
GO:GO:0005737GO:GO:0005856GO:GO:0008270hmmpanther:PTHR24206hmmpanther:PTHR24206:SF28HOGENOM:HOG000111235InterPro:IPR001781
iPTMnet:Q9M047KEGG:ath:AT3G55770OMA:MEEIFCKPfam:PF00412Pfam:Q9M047Pfscan:PS50023PhylomeDB:Q9M047
PIR:T47716PRIDE:Q9M047PRO:PR:Q9M047PROSITE:PS00478PROSITE:PS50023ProteinModelPortal:Q9M047Proteomes:UP000006548
RefSeq:NP_001030868.1RefSeq:NP_001030869.1RefSeq:NP_001030870.1RefSeq:NP_001190099.1RefSeq:NP_191136.1RefSeq:NP_680133.2scanprosite:PS00478
SMART:SM00132SMR:Q9M047SUPFAM:SSF57716TAIR:AT3G55770UniGene:At.25097UniProt:Q9M047
Coordinates (TAIR10) chr3:+:20703799..20705115
Molecular Weight (calculated) 21664.80 Da
IEP (calculated) 9.16
GRAVY (calculated) -0.38
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)