AT3G55630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.878 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DHFS-FPGS homolog D | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DHFS-FPGS homolog D (DFD); CONTAINS InterPro DOMAIN/s: Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, central (InterPro:IPR013221), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: DHFS-FPGS homolog B (TAIR:AT5G05980.2); Has 7683 Blast hits to 7678 proteins in 2538 species: Archae - 43; Bacteria - 4846; Metazoa - 166; Fungi - 352; Plants - 132; Viruses - 0; Other Eukaryotes - 2144 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20636785..20639395 | ||||||||||||||||||||
| Molecular Weight (calculated) | 52607.20 Da | ||||||||||||||||||||
| IEP (calculated) | 7.73 | ||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||
| Length | 470 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATEDDGELS ARYQNTLDAL SSLITKRGRL ASNNQSHRFR LLFHYLKVLE LEDAVSQMKI IHVAGTKGKG STCTFAESIL RCYGLRTGLF TSPHLIDVRE 101: RFRLNGIEIS QEKFVNYFWC CFHKLKEKTS NEVDVVILEV GLGGRFDATN VIQKPVVCGI SSLGYDHMEI LGYTLAEIAA EKAGIFKSGV PAFTVAQPDE 201: AMRVLNEKAS KLEVNLQVVE PLDSSQRLGL QGEHQYLNAG LAVALCSTFL KEIGIEDKNG LDQTNGLPEK FISGLSNAYL MGRAMIVPDS ELPEEIVYYL 301: DGAHSPESME ACAIWFSKQI KQNQERNQKR SEQILLFNCM SVRDPSLLLP RLRSKCIDQG VDFKRAVFVP NVSVYNQVGS STNVGTRVES MSWQFGLQRI 401: WESLARGEAK SNSKSDSKGK EEEKSFVFSS LPVAVDWLRD NARQSKQVRF QVLVTGSLHL VGDLLRFIKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)