suba logo
AT3G55605.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:19688752 (2009): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Mitochondrial glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: Mitochondrial glycoprotein family protein (TAIR:AT2G39795.1); Has 417 Blast hits to 417 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 121; Plants - 221; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111MS5eggNOG:KOG2536EMBL:AK227795EMBL:AY086417EMBL:BT006410EMBL:CP002686EnsemblPlants:AT3G55605
EnsemblPlants:AT3G55605.1entrez:824726Gene3D:3.10.280.10GeneID:824726GO:GO:0005759Gramene:AT3G55605.1hmmpanther:PTHR10826
hmmpanther:PTHR10826:SF4IntAct:Q8LCT2InterPro:IPR003428KEGG:ath:AT3G55605KO:K15414OMA:RAMPFSSPfam:PF02330
PhylomeDB:Q8LCT2Proteomes:UP000006548RefSeq:NP_567025.1SMR:Q8LCT2STRING:3702.AT3G55605.1SUPFAM:SSF54529TAIR:AT3G55605
UniGene:At.25196UniGene:At.35010UniProt:Q8LCT2
Coordinates (TAIR10) chr3:+:20622668..20623889
Molecular Weight (calculated) 29014.70 Da
IEP (calculated) 4.30
GRAVY (calculated) -0.56
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFALCIRRS ASTLASVCGR VARAQAVSAI VNRSSLVPKP SLLRPFVSRG FPYSTATEPL KSDQTLIQVI DSEIKDSFEA DDHDADEETI DSSDFPFKIE
101: DNPGHRTVTL TREYNGEQIK VEVSMPGLAM DENEDDVDDD EDGDGRHEKS NESSIPLVVT VTKKSGLSLE FSCTAFPDEI VIDGLSVNRP DDSSEEQLTY
201: DGPDFQELDE NMRKSFHKFL ETRGIKASAT DFLYEYMMKK DSREYLLWLK KLKTFVQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)