AT3G55600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Membrane fusion protein Use1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Membrane fusion protein Use1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Use1 (InterPro:IPR019150); BEST Arabidopsis thaliana protein match is: Membrane fusion protein Use1 (TAIR:AT1G54110.1); Has 235 Blast hits to 235 proteins in 85 species: Archae - 1; Bacteria - 13; Metazoa - 90; Fungi - 42; Plants - 82; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20620682..20622341 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26837.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.16 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||
| Length | 240 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMGISKTEIN LRRLLSAAPN QQNQSKLMHY VATLREQLEQ LSEEKTPEGL PRVTKAKVNE YYEKIEAVAS KIASQEPETE VSDEPFAKDS TSGSSPKIED 101: EPRSPTSPQL RRRIVPASSK EQSFDAADAD SSKPIKLDTA AQAHIDKHRK LQEDLTDEMV VLARQLKERS QAISQSVQNT EKILDSTEEA IEQSLASTGH 201: ATTRATKIYS QSSKTSCFQW LLIFAMICVF IMVVLLIRVT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)