AT3G55580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of chromosome condensation (RCC1) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G53830.1); Has 20178 Blast hits to 6212 proteins in 476 species: Archae - 78; Bacteria - 2696; Metazoa - 7040; Fungi - 1181; Plants - 2975; Viruses - 2; Other Eukaryotes - 6206 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20612766..20615730 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51409.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.32 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 488 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNGEGKLETG GTSAAATPKE EKEEEEVVSQ RVVYMWGYLP GASPQRSPLM SPVEVKIPPA VESSWKDVSG GGCGFAMATA ESGKLITWGS TDDLGQSYVT 101: SGKHGETPEP FPLPPEVCVQ KAEAGWAHCV AVTENQQVYT WGWRECIPTG RVFGQVDGDS CERNISFSTE QVSSSSQGKK SSGGTSSQVE GRGGGEPTKK 201: RRISPSKQAA ENSSQSDNID LSALPCLVSL APGVRIVSVA AGGRHTLALS DIGQVWGWGY GGEGQLGLGS RVRLVSSPHP IPCIEPSSYG KATSSGVNMS 301: SVVQCGRVLG SYVKKIACGG RHSAVITDTG ALLTFGWGLY GQCGQGSTDD ELSPTCVSSL LGIRIEEVAA GLWHTTCASS DGDVYAFGGN QFGQLGTGCD 401: QAETLPKLLE APNLENVNVK TISCGARHTA VITDEGRVFC WGWNKYGQLG IGDVIDRNAP AEVRIKDCFP KNIACGWWHT LLLGQPTL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)