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AT3G55560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AT-hook protein of GA feedback 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT-hook protein of GA feedback 2 (AGF2); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 20 (TAIR:AT4G14465.1); Has 804 Blast hits to 798 proteins in 45 species: Archae - 0; Bacteria - 14; Metazoa - 18; Fungi - 6; Plants - 758; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW1DeggNOG:ENOG410YBADEMBL:AL132975EMBL:AY086028EMBL:BR000351EMBL:BT024777EMBL:CP002686
EnsemblPlants:AT3G55560EnsemblPlants:AT3G55560.1entrez:824721GeneID:824721Genevisible:Q9M2S3GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0045087GO:GO:0045824Gramene:AT3G55560.1hmmpanther:PTHR31100hmmpanther:PTHR31100:SF13
HOGENOM:HOG000239043InterPro:IPR005175InterPro:IPR014476iPTMnet:Q9M2S3KEGG:ath:AT3G55560OMA:MAQHDVYPaxDb:Q9M2S3
Pfam:PF03479Pfam:Q9M2S3Pfscan:PS51742PhylomeDB:Q9M2S3PIR:T47695PIRSF:PIRSF016021PRIDE:Q9M2S3
PRO:PR:Q9M2S3PROSITE:PS51742ProteinModelPortal:Q9M2S3Proteomes:UP000006548RefSeq:NP_191115.1SMR:Q9M2S3STRING:3702.AT3G55560.1
SUPFAM:SSF117856TAIR:AT3G55560tair10-symbols:AGF2tair10-symbols:AHL15UniGene:At.35015UniProt:Q9M2S3
Coordinates (TAIR10) chr3:-:20604904..20605836
Molecular Weight (calculated) 32604.80 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.64
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MANPWWVGNV AIGGVESPVT SSAPSLHHRN SNNNNPPTMT RSDPRLDHDF TTNNSGSPNT QTQSQEEQNS RDEQPAVEPG SGSGSTGRRP RGRPPGSKNK
101: PKSPVVVTKE SPNSLQSHVL EIATGADVAE SLNAFARRRG RGVSVLSGSG LVTNVTLRQP AASGGVVSLR GQFEILSMCG AFLPTSGSPA AAAGLTIYLA
201: GAQGQVVGGG VAGPLIASGP VIVIAATFCN ATYERLPIEE EQQQEQPLQL EDGKKQKEEN DDNESGNNGN EGSMQPPMYN MPPNFIPNGH QMAQHDVYWG
301: GPPPRAPPSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)