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AT3G55520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-type peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT5G48570.1); Has 8353 Blast hits to 7666 proteins in 1517 species: Archae - 10; Bacteria - 3980; Metazoa - 1950; Fungi - 483; Plants - 752; Viruses - 0; Other Eukaryotes - 1178 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G55520-MONOMERBioGrid:10033EC:5.2.1.8eggNOG:COG0545eggNOG:KOG0543EMBL:AL132975EMBL:AY065308
EMBL:AY085181EMBL:AY091314EMBL:CP002686EnsemblPlants:AT3G55520EnsemblPlants:AT3G55520.1entrez:824717GeneID:824717
Genevisible:Q9M2S7GO:GO:0003755GO:GO:0006457Gramene:AT3G55520.1hmmpanther:PTHR10516hmmpanther:PTHR10516:SF326HOGENOM:HOG000154887
InParanoid:Q9M2S7IntAct:Q9M2S7InterPro:IPR001179InterPro:IPR023566KEGG:ath:AT3G55520KO:K01802ncoils:Coil
OMA:DIALKTMPANTHER:PTHR10516PaxDb:Q9M2S7Pfam:PF00254Pfam:Q9M2S7Pfscan:PS50059PhylomeDB:Q9M2S7
PIR:T47691PRIDE:Q9M2S7PRO:PR:Q9M2S7PROSITE:PS50059ProteinModelPortal:Q9M2S7Proteomes:UP000006548RefSeq:NP_191111.1
SMR:Q9M2S7STRING:3702.AT3G55520.1SUPFAM:SSF54534TAIR:AT3G55520UniGene:At.28462UniGene:At.48772UniProt:Q9M2S7
Coordinates (TAIR10) chr3:+:20594177..20595128
Molecular Weight (calculated) 20349.30 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.49
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)