AT3G55510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Noc2p family | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
REBELOTE (RBL); INVOLVED IN: floral meristem determinacy; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0120 (InterPro:IPR005343); BEST Arabidopsis thaliana protein match is: Noc2p family (TAIR:AT2G18220.1); Has 382 Blast hits to 364 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 131; Plants - 77; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20579232..20582124 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68370.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.12 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||
| Length | 594 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKLGKKARK FAKKNLQSVE KRSRKLKPFI KKKFAKRNER HQAGDKQEKK VEQQPKKRCQ EEEFQDIAID AVFGKDDDEV LRDGDSDSDG YLDELVNETD 101: SDIMKCKVLS RSFLATCCDM VDKEQYVPAL VRLLNWYRAA CQYGHEPSGI ARPNIYYDIE DSETFAKVII FVLQKADHTF RSILGLSDSS TKEKILKLKN 201: NPKWDSLKPL VKSFFRSTLH LVKQAGDLEI ISFTLTQLRV SIVFLAAFPD LLKKLIKISV HLWVTGEETI SQQAFLILKD ISMVFNSECF DSCLINMYKA 301: FLHDCDIPKA NSEQRPFLRD SLVELCSQDV QKSYTKASVS ITQLAKLLKM ALATKNKEAV EKIHSGEYIN CVDLWVNFIS ANVQDCDLQP LLYTIVQVIN 401: GVAQLIIGPR YLLLRVKCIH WLNHLSRTSG IFIPIASLVL DMLEYKTTND GEKQEQKLEA VSTVKLPKNW LKSQNFQEQC IFSVIELLAV HFAQWSFHIS 501: FPDLATIPVM RLKKFHERST MEGLKRVVKR FIEQVESNIE FVQRKRDDVT FSPNDQQSAD TFMQLEKQNA NAPYTQYYQS IIDKALGTNK KKKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)