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AT3G55460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SC35-like splicing factor 30
Curator
Summary (TAIR10)
encodes an SC35-like splicing factor that is localized to nuclear specks.
Computational
Description (TAIR10)
SC35-like splicing factor 30 (SCL30); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to oxidative stress, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1); Has 999798 Blast hits to 999477 proteins in 36048 species: Archae - 21842; Bacteria - 604317; Metazoa - 201442; Fungi - 24075; Plants - 55248; Viruses - 69771; Other Eukaryotes - 23103 (source: NCBI BLink).
Protein Annotations
BioGrid:10028eggNOG:COG0724eggNOG:KOG0118EMBL:AJ293798EMBL:AL132975EMBL:AY086131EMBL:AY099649
EMBL:AY128836EMBL:CP002686EnsemblPlants:AT3G55460EnsemblPlants:AT3G55460.1entrez:824712Gene3D:3.30.70.330GeneID:824712
Genevisible:Q8L3X8GO:GO:0000166GO:GO:0000398GO:GO:0003723GO:GO:0005681GO:GO:0006979GO:GO:0008380
GO:GO:0016607GO:GO:0042802hmmpanther:PTHR23147hmmpanther:PTHR23147:SF13HOGENOM:HOG000276233IntAct:Q8L3X8InterPro:IPR000504
InterPro:IPR012677iPTMnet:Q8L3X8KEGG:ath:AT3G55460KO:K12900OMA:NGQIFAGPaxDb:Q8L3X8Pfam:PF00076
Pfam:Q8L3X8Pfscan:PS50102PIR:T47685PRIDE:Q8L3X8PRO:PR:Q8L3X8PROSITE:PS50102ProteinModelPortal:Q8L3X8
Proteomes:UP000006548RefSeq:NP_567021.1SMART:SM00360SMR:Q8L3X8STRING:3702.AT3G55460.1SUPFAM:SSF54928TAIR:AT3G55460
tair10-symbols:At-SCL30tair10-symbols:SCL30UniGene:At.10035UniProt:Q8L3X8
Coordinates (TAIR10) chr3:+:20561024..20563502
Molecular Weight (calculated) 29569.10 Da
IEP (calculated) 11.75
GRAVY (calculated) -1.46
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)