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AT3G55420.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.843
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:824708eggNOG:ENOG410IJB8eggNOG:ENOG410YCB8EMBL:AL132975EMBL:AY070382EMBL:AY117239EMBL:CP002686
EnsemblPlants:AT3G55420EnsemblPlants:AT3G55420.1entrez:824708GeneID:824708Gramene:AT3G55420.1hmmpanther:PTHR36375hmmpanther:PTHR36375:SF1
HOGENOM:HOG000241479KEGG:ath:AT3G55420OMA:AYLPTNFPhylomeDB:Q9M2T7PIR:T47681Proteomes:UP000006548RefSeq:NP_191102.1
TAIR:AT3G55420UniGene:At.28376UniProt:Q9M2T7
Coordinates (TAIR10) chr3:+:20547920..20548570
Molecular Weight (calculated) 24147.80 Da
IEP (calculated) 10.69
GRAVY (calculated) -0.15
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKEKKTKK KKKKEKHQSS DISFKPSSDV KGLKFGGQII VKSFTIRRAR TFELLKLLSL PSSSSPPLLS TAAYLPTNFT ILAHHAWHTL TLGLGTRKSK
101: VVVFVFETEA MKSSVVAAEG GIWPSEIPLG DVNKKMIRKL KNWEMARFKF RKGCITFYVY AVRNAGNEGF AAAEDLKVIL QAVVALKDFM DHTAMLVMPH
201: QKSINYSSCP PFAMAH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)