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AT3G55400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
OVULE ABORTION 1 (OVA1); FUNCTIONS IN: methionine-tRNA ligase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Methionyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR014758), Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413), Methionyl-tRNA synthetase, class Ia (InterPro:IPR002304), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 26528 Blast hits to 25030 proteins in 3018 species: Archae - 991; Bacteria - 17017; Metazoa - 429; Fungi - 593; Plants - 193; Viruses - 3; Other Eukaryotes - 7302 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G55400-MONOMEREC:6.1.1.10eggNOG:COG0143eggNOG:KOG0436EMBL:AF367354EMBL:AL132975EMBL:AY133597
EMBL:CP002686EMBL:Y13943EnsemblPlants:AT3G55400EnsemblPlants:AT3G55400.1entrez:824706ExpressionAtlas:Q9M2T9Gene3D:1.10.730.10
Gene3D:3.40.50.620GeneID:824706Genevisible:Q9M2T9GO:GO:0004825GO:GO:0005524GO:GO:0005739GO:GO:0006431
GO:GO:0009507GO:GO:0009570GO:GO:0048481gramene_pathway:6.1.1.10gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_01228hmmpanther:PTHR11946
hmmpanther:PTHR11946:SF89InParanoid:Q9M2T9InterPro:IPR009080InterPro:IPR013155InterPro:IPR014729InterPro:IPR014758InterPro:IPR015413
InterPro:IPR023457KEGG:00450+6.1.1.10KEGG:00970+6.1.1.10OMA:YITEQEPPaxDb:Q9M2T9Pfam:PF08264Pfam:PF09334
PhylomeDB:Q9M2T9PIR:T47679PIR:T50641PRIDE:Q9M2T9PRINTS:PR01041PRO:PR:Q9M2T9ProteinModelPortal:Q9M2T9
Proteomes:UP000006548RefSeq:NP_191100.1SMR:Q9M2T9STRING:3702.AT3G55400.1SUPFAM:SSF47323SUPFAM:SSF52374TAIR:AT3G55400
tair10-symbols:OVA1TIGRfam:TIGR00398TIGRFAMs:TIGR00398UniGene:At.249UniGene:At.35029UniProt:Q9M2T9
Coordinates (TAIR10) chr3:-:20535809..20538999
Molecular Weight (calculated) 69277.60 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.30
Length 616 amino acids
Sequence (TAIR10)
(BLAST)
001: MAARINTSLH NALSFLKPFN TPLNTKPFSF RRNSFRFSKK LPYYSQFSSG KRALYCTSSS QESTVDEGET FVLTTPLYYV NAPPHMGSAY TTIAADSIAR
101: FQRLLGKKVI FITGTDEHGE KIATSAAANG RNPPEHCDLI SQSYRTLWKD LDIAYDKFIR TTDPKHEAIV KEFYARVFAN GDIYRADYEG LYCVNCEEYK
201: DEKELLENNC CPVHQMPCVA RKEDNYFFAL SKYQKPLEDI LAQNPRFVQP SYRLNEVQSW IKSGLRDFSI SRALVDWGIP VPDDDKQTIY VWFDALLGYI
301: SALTEDNKQQ NLETAVSFGW PASLHLIGKD ILRFHAVYWP AMLMSAGLEL PKMVFGHGFL TKDGMKMGKS LGNTLEPFEL VQKFGPDAVR YFFLREVEFG
401: NDGDYSEDRF IKIVNAHLAN TIGNLLNRTL GLLKKNCEST LVVDSTVAAE GVPLKDTVEK LVEKARTNYE NLSLSSACEA VLEIGNAGNT YMDQRAPWFL
501: FKQGGVSAEE AAKDLVIILE VMRVIAVALS PVAPCLSLRI YSQLGYTEDQ FNSITWSDTK WGGLKGGQVM EQASPVFARI ELNPEKEEDE KKPKVGKKTG
601: KAKVKVVEQT PTVAEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)