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AT3G55390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G38480.1); Has 361 Blast hits to 361 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 361; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVWTeggNOG:ENOG410YSG0EMBL:AL132975EMBL:AY088394
EMBL:BT024913EMBL:CP002686EnsemblPlants:AT3G55390EnsemblPlants:AT3G55390.1
entrez:824705GeneID:824705Genevisible:Q9M2U0GO:GO:0005886
GO:GO:0016021Gramene:AT3G55390.1hmmpanther:PTHR11615hmmpanther:PTHR11615:SF138
HOGENOM:HOG000244127InParanoid:Q9M2U0InterPro:IPR006459InterPro:IPR006702
KEGG:ath:AT3G55390OMA:FRFAAFCPaxDb:Q9M2U0Pfam:PF04535
Pfam:Q9M2U0PhylomeDB:Q9M2U0PIR:T47678PRO:PR:Q9M2U0
Proteomes:UP000006548RefSeq:NP_191099.1STRING:3702.AT3G55390.1TAIR:AT3G55390
TIGRfam:TIGR01569TIGRFAMs:TIGR01569TMHMM:TMhelixUniGene:At.249
UniGene:At.35029UniProt:Q9M2U0
Coordinates (TAIR10) chr3:+:20534785..20535620
Molecular Weight (calculated) 21687.90 Da
IEP (calculated) 8.50
GRAVY (calculated) 0.36
Length 194 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSPHAFRNG ESPTLRDHTH FHSTVTAQKL RRFNSLILLL RLASFSFSLA SAVFMLTNSR GSASPHWYDF DAFRFVFVAN AIVALYSVFE MGTCVWEFSR
101: ETTLWPEAFQ VWFDFGHDQV FSYLLLSAGS AAAALARTMR GGDTCTANKA FCLQSDVAIG LGFAAFLFLA FSSCFSGFRV ACFLITGSRF HLYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)