suba logo
AT3G55370.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : OBF-binding protein 3
Curator
Summary (TAIR10)
Encodes a nuclear localized Dof domain containing transcription factor expressed primarily in roots. Responsive to salicylic acid. Transgenic overexpressors have yellow leaves and short, defective roots.
Computational
Description (TAIR10)
OBF-binding protein 3 (OBP3); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT5G02460.1); Has 1095 Blast hits to 1086 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1086; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:10019EMBL:AF155818EMBL:AK221402EMBL:AL132975EMBL:BT033028EMBL:CP002686EnsemblPlants:AT3G55370
EnsemblPlants:AT3G55370.1entrez:824703ExpressionAtlas:Q9M2U1GeneID:824703Genevisible:Q9M2U1GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0046872hmmpanther:PTHR31992hmmpanther:PTHR31992:SF13HOGENOM:HOG000239956InParanoid:Q9M2U1
IntAct:Q9M2U1InterPro:IPR003851MINT:MINT-8069760Pfam:PF02701Pfam:Q9M2U1Pfscan:PS50884PhylomeDB:Q9M2U1
PIR:T47676PIR:T50640PRIDE:Q9M2U1PRO:PR:Q9M2U1ProDom:PD007478PROSITE:PS01361PROSITE:PS50884
ProteinModelPortal:C0SVF0ProteinModelPortal:Q9M2U1Proteomes:UP000006548RefSeq:NP_191097.3scanprosite:PS01361TAIR:AT3G55370tair10-symbols:OBP3
UniGene:At.19958UniProt:C0SVF0UniProt:Q9M2U1
Coordinates (TAIR10) chr3:+:20527198..20528876
Molecular Weight (calculated) 35524.00 Da
IEP (calculated) 9.58
GRAVY (calculated) -0.73
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)