AT3G55190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: glycerol biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G39420.1); Has 3264 Blast hits to 3262 proteins in 1077 species: Archae - 36; Bacteria - 2164; Metazoa - 108; Fungi - 125; Plants - 448; Viruses - 35; Other Eukaryotes - 348 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20458007..20459890 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36233.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||
| Length | 319 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAHVDGQVGY SEEFIENSRG MQLLTCKWFP VNQEPRALIF FCHGYAIDCS TTFKDIAPKF AKEGFAVHGI EYEGHGRSSG LSVYIDNFDL LIDDVSSHFS 101: KISEMGDNTK KKRFLMGESM GGAVVLLLHR KKPEFWDGGI LIAPMCKIAE EMKPSRMVIS MINMVTNLIP SWKSIIHGPD ILNSAIKLPE KRHEIRTNPN 201: CYNGWPRMKT MSELFRISLD LENRLNEVTM PFIVLHGEDD KVTDKGGSKL LYEVALSNDK TLKLYPEMWH SLLFGEPPEN SEIVFNDIVQ WMQTRITTLQ 301: VKANNHEAKT SNLITSDSV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)