suba logo
AT3G55180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G39400.1); Has 4129 Blast hits to 4129 proteins in 1315 species: Archae - 32; Bacteria - 2874; Metazoa - 141; Fungi - 140; Plants - 467; Viruses - 36; Other Eukaryotes - 439 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2127-MONOMEReggNOG:COG2267eggNOG:KOG1455EMBL:AL132954
EMBL:CP002686EnsemblPlants:AT3G55180EnsemblPlants:AT3G55180.1entrez:824684
ESTHER:arath-T26I12.60Gene3D:3.40.50.1820GeneID:824684GO:GO:0016787
Gramene:AT3G55180.1hmmpanther:PTHR11614hmmpanther:PTHR11614:SF92HOGENOM:HOG000003228
InterPro:IPR000073InterPro:IPR022742InterPro:IPR029058KEGG:ath:AT3G55180
MEROPS:S33.A31OMA:NEYCYKGPfam:PF12146PhylomeDB:Q9M3D1
PIR:T47657PRINTS:PR00111Proteomes:UP000006548Reactome:R-ATH-1482883
Reactome:R-ATH-426048RefSeq:NP_191078.1STRING:3702.AT3G55180.1SUPFAM:SSF53474
TAIR:AT3G55180UniGene:At.53935UniProt:Q9M3D1
Coordinates (TAIR10) chr3:+:20454903..20456682
Molecular Weight (calculated) 35591.90 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.31
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMYKEDYVS NSRGIQLFTC SWKQEEQQEP KALIFLCHGY AMESSITMSS TAVRLANAGF SVYGMDYEGH GKSGGLNGYV KKFDDLVQDV SSHYSSICEL
101: EENKGKMRFL MGESMGGAVV LLLERKKPNF WDGAVLVAPM CKLAEDIKPH PMVISFLTKL TRFIPTWKIV PSNDIIDVAF KETHIRKQVR DNEYCYKGRP
201: RLKTAHQLLM VSLDLEKNLD QVSMPFIVLH GEDDKVTDKN VSKLLYEVAS SSDKTFKLYP NMWHGLLYGE SPENLEIVFS DIISWLKERA SVTNQKLETE
301: LKHVDDGFSM QK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)