AT3G55160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.552 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2428, death-receptor-like (InterPro:IPR019442); Has 357 Blast hits to 330 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20445629..20452400 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 240624.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.24 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||
| Length | 2130 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSAKWRALQH RHRYTYSAVL FPSSFTASLS QSSLSQSCPK FYSNIEELVS LNSIYAQVNH AKKVVASFGE FLAKANENEG GERETVSVRE AIRFYLEILF 0101: MENSLPLHKT LVSALAKTTK FHSVISSCFK ELCDEYGGFE DGGNRFCVSR VALSVMGMPK LGYLVDIIED CALLVGYDIV SGLNGIVLDT EACDRPPPTV 0201: MEQCQEALSC SYYLFQRFPL KFKGLVGEDA SFMESVLAVQ VSILKSLAFS RDCYVAAGVS FCAALQVCLK DEELGLFIAQ CIFCWSSVVR LADIVSKIPF 0301: AGDICSEICS FSSLSRLCLI RGILTTVSRG ILVSSFARLS NSDCDHKTIL YDGILLELCD LCENPIDSHL NFHVLTVMQI CMQQIKTSML TDLSEGYDPM 0401: PDSMAARVLR IIWNNLEDPL SQTVKQVHLM FDLLLDIQTT VHQTDDKVGM RESLLKIVNY LLRLGSRCKG RYVPLASLTR RLGAKTLMDM SPNLLFEMAN 0501: AYIDDDVCYA VTSFIKCFLE LLRDESWGSE GVDQGYARYR EHCLPPFLYG LASGKSKLRS NLNTYAVQVL LELDVDSIFL LLAYISIGPS EEETKLNYTE 0601: LSNMSMELTV EQKVVVLVSL LKVCRTLAFL EGDIEQKRST DAFAVVQIKG IELKIPIEWL KMALTHVDES VRVDAAETLF LNPKTSSLPS PLELYLMKEA 0701: VPLNMRSSST GFQMKWTSLF RKFFLRVRTS LEKQYKLGSL QPLKSDKNAV LRAESLFKFM RWLSSFLYLS CYPSAPYRRK IMATELIQIM IEVWPVVASK 0801: DPTSHQGHLY PYCDIVTSHD STLLLVGSIV DSWDRLRENS FRILLHFPTP FTGISSEDMV QIIIPWAKQL VCSPRVRESD AGALTLRLIF RKYVLDLGWI 0901: VKVSTTVFCC ERECENIDCR NQNSKPKYPV VEYIKSLIQW LDASVTEGER DLSEACKNSF VHGVLLALRY TFEELDWNSN AVLSISEMRK ELEKLLKLVT 1001: RITTLALWVV SADALCLPED MDDIIDDDSF FSNVQDDSAA VLSEEHTSTY PKHVHETVQS EQVVMVGCWL AMKEVSLLLG TIIRKIPLPT SSLRPLENGD 1101: TASSVPNDLV IGNSESLLDL KQLEKIGDHF LEVLLKMKHN GAIDKTRAGF TALCHRLLCS NDPRLCKLTE SWMEQLMERT VAKGQTVDDV LRRSAGIPAA 1201: FIALFLSEPE GSPKKLLPRA LRWLIGLAEK PLMEPLEQKG SKHMVEEINS SDMHSNEKLS KVRDEGVVPT VHAFNVLKAT FNDTNLSTDT SGFSAEAMIV 1301: SIRSFSSPYW EVRNSATLAY TALVRRMIGF LNVQKRGSTR RALTGLEFFH RYPLLHPFIY SELKAATDLL DTSGSSDSNL ANLVHPSLWP ILILLSRLKP 1401: SPIASESGDD LDPFVFMPFI MKCSTQSNLR VRVLASRALV GLVSNEKLQS VLLRIASTLP SNGAQGGSFN YLHGILLQLG NLLDTNCRDL ADNSKKDQII 1501: GKLINVLANC SWLASPLTCP CPILCTSFLR VLDHMRVIEW TCSESKNLRD IYKLHLDLST NCLDADASYG FSYYDPSIAE LREQAAVSYF GCVFQPSDEA 1601: AEVFQITQRP NLQSQKVPEA LDFPHLNERL LRCISDQSYE VRLATLKWFL RFLKSEDSSF SESSSIWNWA KNGLQVILLE LLDKEKNHKC ENYILRILFQ 1701: WNLLMFKKSC NKESVEGIYV GSLNYDSVFH LWGRLTSLYE STRRAKTRGT LMCCLAICVK HLTGLFIHKN ESEKEEEPRW SCITDCVSYF VNLIKQKSLP 1801: SEQVNVRHAS AEAIIASGIL EQAKLIGPLV SNHQISSETT PSKFQKACDV YAYQILEMWF TCIKLLEDED DVIRSKLATD VQKCFFTAVE VPTQVDKVLE 1901: LSFNHLSSIL GHWNEYSQYL SRWVFNTADY TSPPKGGSDL VRRVFDKEID NHHEEKLLIL QFCCYHLQKL PNRDFSLAQL LDWRSKFHNQ LLAFAKDHVS 2001: KQRESWVGGV GNHKDVFLPL YGNLLGLYVF SDCIFRFSTD SNDKKTLFSD IIELGEALKP FLRNPLVSNM FRVVVRLHEK LLNDSLMDLS TVLSGEIWEG 2101: FDPYFLLTEG EIKVRSFYSD ESGACSPPLG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)