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AT3G55140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G09540.1); Has 1866 Blast hits to 1858 proteins in 295 species: Archae - 2; Bacteria - 979; Metazoa - 0; Fungi - 175; Plants - 677; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Protein Annotations
EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410II6YEMBL:BT033077EMBL:BT033083EMBL:CP002686EnsemblPlants:AT3G55140
EnsemblPlants:AT3G55140.1entrez:824680ExpressionAtlas:B3LF89Gene3D:2.160.20.10GeneID:824680GO:GO:0030570GO:GO:0045490
GO:GO:0046872Gramene:AT3G55140.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF23InterPro:IPR002022InterPro:IPR011050InterPro:IPR012334
InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT3G55140KO:K01728OMA:FHPSEFYPfam:PF00544PhylomeDB:B3LF89
PRINTS:PR00807Proteomes:UP000006548RefSeq:NP_191074.2SMART:SM00656SMR:B3LF89STRING:3702.AT3G55140.1SUPFAM:SSF51126
TAIR:AT3G55140UniGene:At.35049UniPathway:UPA00545UniProt:B3LF89
Coordinates (TAIR10) chr3:+:20438819..20440225
Molecular Weight (calculated) 37188.10 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.44
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSLPYADAD CSLRALAGRA EGFGRFAVGG LHGDLYVVTS LADDGPGTLR EGGRRKEPLW IVFAVSGTIN LNSYLSVSSY KTIDGRGQRI KLTGKGIRLK
101: ECEHIIICNL EFEGGRGHDV DGIQIKPKSR HIWIDRCSLR DYDDGLIDIT RQSTDITVSR CYFAQHDKTM LIGADPSHVE DRCIRVTIHH CFFDGTRQRQ
201: PRLRFGKVHL YNNYTRNWGI YAVCASVEAQ VFSQCNIYEA GVKKKTFEYY SEKAADKEEA RTGLVRSEND LFLNGAQPSL MTGASEECVF HPSEHYPTWT
301: VEPPSETLKQ IMQICTGWQS LSRPSDHGVP K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)