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AT3G55130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.639
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : white-brown complex homolog 19
Curator
Summary (TAIR10)
Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.
Computational
Description (TAIR10)
white-brown complex homolog 19 (WBC19); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G55110.1); Has 390163 Blast hits to 355286 proteins in 4114 species: Archae - 7174; Bacteria - 309284; Metazoa - 8345; Fungi - 6290; Plants - 5468; Viruses - 12; Other Eukaryotes - 53590 (source: NCBI BLink).
Protein Annotations
BioGrid:9995eggNOG:COG1131eggNOG:KOG0061EMBL:AL132954EMBL:AY045932EMBL:AY079387EMBL:CP002686
EnsemblPlants:AT3G55130EnsemblPlants:AT3G55130.1entrez:824679Gene3D:3.40.50.300GeneID:824679Genevisible:Q9M3D6GO:GO:0005524
GO:GO:0005774GO:GO:0005775GO:GO:0005886GO:GO:0007034GO:GO:0016021GO:GO:0042626GO:GO:0042891
GO:GO:0055085Gramene:AT3G55130.1hmmpanther:PTHR19241hmmpanther:PTHR19241:SF258HOGENOM:HOG000238446InParanoid:Q9M3D6IntAct:Q9M3D6
InterPro:IPR003439InterPro:IPR003593InterPro:IPR013525InterPro:IPR017871InterPro:IPR027417KEGG:ath:AT3G55130MINT:MINT-8065614
OMA:YLAYCLLPaxDb:Q9M3D6Pfam:PF00005Pfam:PF01061Pfam:Q9M3D6Pfscan:PS50893PhylomeDB:Q9M3D6
PIR:T47652PRIDE:Q9M3D6PRO:PR:Q9M3D6PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q9M3D6Proteomes:UP000006548
RefSeq:NP_191073.1scanprosite:PS00211SMART:SM00382SMR:Q9M3D6STRING:3702.AT3G55130.1SUPFAM:SSF52540TAIR:AT3G55130
tair10-symbols:ATWBC19tair10-symbols:WBC19TMHMM:TMhelixUniGene:At.1136UniGene:At.23809UniProt:Q9M3D6
Coordinates (TAIR10) chr3:-:20434111..20436288
Molecular Weight (calculated) 80661.60 Da
IEP (calculated) 8.49
GRAVY (calculated) 0.10
Length 725 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLSLSGRKI AMTRVSAETQ YITPIGSPTL DELLKDCDSF RKGDSGDGVK SDDPAHHIID VEALYVKPVP YVLNFNNLQY DVTLRRRFGF SRQNGVKTLL
101: DDVSGEASDG DILAVLGASG AGKSTLIDAL AGRVAEGSLR GSVTLNGEKV LQSRLLKVIS AYVMQDDLLF PMLTVKETLM FASEFRLPRS LSKSKKMERV
201: EALIDQLGLR NAANTVIGDE GHRGVSGGER RRVSIGIDII HDPIVLFLDE PTSGLDSTNA FMVVQVLKRI AQSGSIVIMS IHQPSARIVE LLDRLIILSR
301: GKSVFNGSPA SLPGFFSDFG RPIPEKENIS EFALDLVREL EGSNEGTKAL VDFNEKWQQN KISLIQSAPQ TNKLDQDRSL SLKEAINASV SRGKLVSGSS
401: RSNPTSMETV SSYANPSLFE TFILAKRYMK NWIRMPELVG TRIATVMVTG CLLATVYWKL DHTPRGAQER LTLFAFVVPT MFYCCLDNVP VFIQERYIFL
501: RETTHNAYRT SSYVISHSLV SLPQLLAPSL VFSAITFWTV GLSGGLEGFV FYCLLIYASF WSGSSVVTFI SGVVPNIMLC YMVSITYLAY CLLLSGFYVN
601: RDRIPFYWTW FHYISILKYP YEAVLINEFD DPSRCFVRGV QVFDSTLLGG VSDSGKVKLL ETLSKSLRTK ITESTCLRTG SDLLAQQGIT QLSKWDCLWI
701: TFASGLFFRI LFYFALLFGS RNKRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)