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AT3G55090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.788
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: membrane; EXPRESSED IN: sepal, root, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT2G39350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:9991eggNOG:COG1131eggNOG:KOG0061EMBL:AL132970
EMBL:BX819631EMBL:CP002686EnsemblPlants:AT3G55090EnsemblPlants:AT3G55090.1
entrez:824675Gene3D:3.40.50.300GeneID:824675Genevisible:Q9M2V7
GO:GO:0005524GO:GO:0005886GO:GO:0010208GO:GO:0016021
GO:GO:0042626GO:GO:0055085Gramene:AT3G55090.1hmmpanther:PTHR19241
hmmpanther:PTHR19241:SF180HOGENOM:HOG000238446InParanoid:Q9M2V7InterPro:IPR003439
InterPro:IPR003593InterPro:IPR013525InterPro:IPR017871InterPro:IPR027417
KEGG:ath:AT3G55090OMA:RSIGMRIPaxDb:Q9M2V7Pfam:PF00005
Pfam:PF01061Pfam:Q9M2V7Pfscan:PS50893PhylomeDB:Q9M2V7
PIR:T47648PRIDE:Q9M2V7PRO:PR:Q9M2V7PROSITE:PS00211
PROSITE:PS50893ProteinModelPortal:Q9M2V7Proteomes:UP000006548RefSeq:NP_191069.2
scanprosite:PS00211SMART:SM00382SMR:Q9M2V7STRING:3702.AT3G55090.1
SUPFAM:SSF52540TAIR:AT3G55090TMHMM:TMhelixUniGene:At.35054
UniProt:Q9M2V7
Coordinates (TAIR10) chr3:-:20416342..20418552
Molecular Weight (calculated) 81708.50 Da
IEP (calculated) 9.59
GRAVY (calculated) 0.15
Length 736 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRILVEDDN ATPFHSMEII SSSLTLGQLL KNVSDVRKVE VGDETPVHEF FDRDGSSLDG DNDHLMRPVP FVLSFNNLTY NVSVRRKLDF HDLVPWRRTS
101: FSKTKTLLDN ISGETRDGEI LAVLGASGSG KSTLIDALAN RIAKGSLKGT VTLNGEALQS RMLKVISAYV MQDDLLFPML TVEETLMFAA EFRLPRSLPK
201: SKKKLRVQAL IDQLGIRNAA KTIIGDEGHR GISGGERRRV SIGIDIIHDP IVLFLDEPTS GLDSTSAFMV VKVLKRIAES GSIIIMSIHQ PSHRVLSLLD
301: RLIFLSRGHT VFSGSPASLP SFFAGFGNPI PENENQTEFA LDLIRELEGS AGGTRGLVEF NKKWQEMKKQ SNPQTLTPPA SPNPNLTLKE AISASISRGK
401: LVSGGGGGSS VINHGGGTLA VPAFANPFWI EIKTLTRRSI LNSRRQPELL GMRLATVIVT GFILATVFWR LDNSPKGVQE RLGFFAFAMS TMFYTCADAL
501: PVFLQERYIF MRETAYNAYR RSSYVLSHAI VTFPSLIFLS LAFAVTTFWA VGLEGGLMGF LFYCLIILAS FWSGSSFVTF LSGVVPHVML GYTIVVAILA
601: YFLLFSGFFI NRDRIPQYWI WFHYLSLVKY PYEAVLQNEF SDPTECFVRG VQLFDNSPLG ELTYGMKLRL LDSVSRSIGM RISSSTCLTT GADVLKQQGV
701: TQLSKWNCLL ITVGFGFLFR ILFYLCLLLG SKNKRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)