AT3G55020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G39280.1); Has 8291 Blast hits to 7654 proteins in 526 species: Archae - 15; Bacteria - 632; Metazoa - 4273; Fungi - 1225; Plants - 609; Viruses - 33; Other Eukaryotes - 1504 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20389278..20394713 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87189.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.58 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||
| Length | 777 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSVAAAAAA AAAASKPSNP LVAFEHKRDA YGFPVRPQHV QRYREYADIY KEEEEERSDR WSSFLEDHVE STELPTNGSS ENIHAPFSES EKEKEKELNK 101: GPGEDLHTDK LGSDVTPDNA SEEEGHPDAE KNVHRVQLWT EIRPSLRSIE DLMSIRVKKK GDLSKSEQEA PKVKISPSFD DAKSSKGASD IDSEDEFYDV 201: ERSDVQDGSS SDGTGVSGIP VAADASPLST CPWKEELEVL IRGGVPMALR GELWQAFVGV RKRRCKDYYQ NLLAADGSVN TIEQEDMQHV DDKGSSTESI 301: AVVEKWKGQI EKDLPRTFPG HPALDDDGRN ALRRLLTAYA RHNPSVGYCQ AMNFFAALLL LLMPEENAFW ALIGLIDDYF NGYYSEEMIE SQVDQLVLEE 401: LVRERFPKLV HHLDYLGVQV AWVTGPWFLS IFMNMLPWES VLRVWDVLLF EGTRVMLFRT ALALMELYGP ALVTTKDAGD AVTLLQSLTG STFDSSQLVL 501: TACMGYQNVH EIRLQELRSK HRPAVIAALE ERSKGLQAWR DSKGLASKLY NFKQDPKSVL VDSKASLSNG SLSRSESGSS NADEVLVSLT GDGEVDSVQD 601: LQAQVLWLKA ELCKLLEEKR SALLRAEELE IALMEIVKED NRRQLSAKVE QLEQEMAEVQ RLLSDKQEQE GAMLQVLMRV EQEQKVTEDA RIFAEQDAEA 701: QRYAAQVLQE KYEEAVAALA EMEKRAVMAE SMLEATLQYQ SGQLKAQPSP RTSSKQDQFA STAIWTRVAR QEQEHNT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)