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AT3G55020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.540
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G39280.1); Has 8291 Blast hits to 7654 proteins in 526 species: Archae - 15; Bacteria - 632; Metazoa - 4273; Fungi - 1225; Plants - 609; Viruses - 33; Other Eukaryotes - 1504 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5210eggNOG:KOG2058EMBL:CP002686EnsemblPlants:AT3G55020EnsemblPlants:AT3G55020.1entrez:824668GeneID:824668
GO:GO:0005829Gramene:AT3G55020.1hmmpanther:PTHR22957hmmpanther:PTHR22957:SF269InParanoid:F4JF82InterPro:IPR000195iPTMnet:F4JF82
KEGG:ath:AT3G55020ncoils:CoilOMA:CPWKEELPaxDb:F4JF82Pfam:PF00566Pfscan:PS50086PRIDE:F4JF82
PROSITE:PS50086ProteinModelPortal:F4JF82Proteomes:UP000006548RefSeq:NP_567014.2SMART:SM00164SMR:F4JF82STRING:3702.AT3G55020.1
SUPFAM:SSF47923TAIR:AT3G55020UniGene:At.1282UniProt:F4JF82
Coordinates (TAIR10) chr3:-:20389278..20394713
Molecular Weight (calculated) 87189.50 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.51
Length 777 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSVAAAAAA AAAASKPSNP LVAFEHKRDA YGFPVRPQHV QRYREYADIY KEEEEERSDR WSSFLEDHVE STELPTNGSS ENIHAPFSES EKEKEKELNK
101: GPGEDLHTDK LGSDVTPDNA SEEEGHPDAE KNVHRVQLWT EIRPSLRSIE DLMSIRVKKK GDLSKSEQEA PKVKISPSFD DAKSSKGASD IDSEDEFYDV
201: ERSDVQDGSS SDGTGVSGIP VAADASPLST CPWKEELEVL IRGGVPMALR GELWQAFVGV RKRRCKDYYQ NLLAADGSVN TIEQEDMQHV DDKGSSTESI
301: AVVEKWKGQI EKDLPRTFPG HPALDDDGRN ALRRLLTAYA RHNPSVGYCQ AMNFFAALLL LLMPEENAFW ALIGLIDDYF NGYYSEEMIE SQVDQLVLEE
401: LVRERFPKLV HHLDYLGVQV AWVTGPWFLS IFMNMLPWES VLRVWDVLLF EGTRVMLFRT ALALMELYGP ALVTTKDAGD AVTLLQSLTG STFDSSQLVL
501: TACMGYQNVH EIRLQELRSK HRPAVIAALE ERSKGLQAWR DSKGLASKLY NFKQDPKSVL VDSKASLSNG SLSRSESGSS NADEVLVSLT GDGEVDSVQD
601: LQAQVLWLKA ELCKLLEEKR SALLRAEELE IALMEIVKED NRRQLSAKVE QLEQEMAEVQ RLLSDKQEQE GAMLQVLMRV EQEQKVTEDA RIFAEQDAEA
701: QRYAAQVLQE KYEEAVAALA EMEKRAVMAE SMLEATLQYQ SGQLKAQPSP RTSSKQDQFA STAIWTRVAR QEQEHNT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)