suba logo
AT3G55010.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:17137349 (2006): mitochondrion
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g55010-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At3g55010-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Curator
Summary (TAIR10)
encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)
Computational
Description (TAIR10)
PUR5; FUNCTIONS IN: phosphoribosylformylglycinamidine cyclo-ligase activity, copper ion binding, ATP binding; INVOLVED IN: purine nucleotide biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PurM, N-terminal-like (InterPro:IPR016188), AIR synthase related protein (InterPro:IPR000728), AIR synthase related protein, C-terminal (InterPro:IPR010918), Phosphoribosylformylglycinamidine cyclo-ligase (InterPro:IPR004733); Has 9318 Blast hits to 9280 proteins in 2601 species: Archae - 368; Bacteria - 5515; Metazoa - 245; Fungi - 143; Plants - 73; Viruses - 3; Other Eukaryotes - 2971 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G55010-MONOMERBioCyc:ARA:GQT-2720-MONOMERBioGrid:9983EC:6.3.3.1eggNOG:COG0150eggNOG:ENOG410INX0EMBL:AL049655
EMBL:AL132970EMBL:AY060585EMBL:AY142054EMBL:CP002686EMBL:L12457EnsemblPlants:AT3G55010EnsemblPlants:AT3G55010.1
EnsemblPlants:AT3G55010.2entrez:824667Gene3D:3.30.1330.10Gene3D:3.90.650.10GeneID:824667Genevisible:Q05728GO:GO:0004641
GO:GO:0005507GO:GO:0005524GO:GO:0005739GO:GO:0006189GO:GO:0009507GO:GO:0009570Gramene:AT3G55010.1
Gramene:AT3G55010.2gramene_pathway:6.3.3.1gramene_pathway:PWY-6121HAMAP:MF_00741hmmpanther:PTHR10520HOGENOM:HOG000229091InParanoid:Q05728
IntAct:Q05728InterPro:IPR004733InterPro:IPR010918InterPro:IPR016188KEGG:00230+6.3.3.1KEGG:ath:AT3G55010KO:K01933
OMA:NHCVNDIPaxDb:Q05728Pfam:PF00586Pfam:PF02769Pfam:Q05728PhylomeDB:Q05728PIR:JQ2256
PIR:T47640PRIDE:Q05728PRO:PR:Q05728ProteinModelPortal:Q05728Proteomes:UP000006548RefSeq:NP_191061.1RefSeq:NP_974437.1
SMR:Q05728STRING:3702.AT3G55010.1SUPFAM:SSF55326SUPFAM:SSF56042TAIR:AT3G55010tair10-symbols:ATPURMtair10-symbols:PUR5
TIGRfam:TIGR00878TIGRFAMs:TIGR00878UniGene:At.1281UniPathway:UPA00074UniProt:Q05728
Coordinates (TAIR10) chr3:+:20386818..20388549
Molecular Weight (calculated) 41506.70 Da
IEP (calculated) 5.14
GRAVY (calculated) 0.01
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MEARILQSSS SCYSSLYAVN RSRFSSVSSP KPFSVSFAQT TRTRTRVLSM SKKDGRTDKD DDTDSLNYKD SGVDIDAGAE LVKRIAKMAP GIGGFGGLFP
101: LGDSYLVAGT DGVGTKLKLA FETGIHDTIG IDLVAMSVND IITSGAKPLF FLDYFATSRL DVDLAEKVIK GIVEGCRQSE CALLGGETAE MPDFYAEGEY
201: DLSGFAVGIV KKTSVINGKN IVAGDVLIGL PSSGVHSNGF SLVRRVLARS NLSLKDALPG GSSTLGDALM APTVIYVKQV LDMIEKGGVK GLAHITGGGF
301: TDNIPRVFPD GLGAVIHTDA WELPPLFKWI QQTGRIEDSE MRRTFNLGIG MVMVVSPEAA SRILEEVKNG DYVAYRVGEV VNGEGVSYQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)