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AT3G54920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Powdery mildew resistant mutant encodes a pectate lyase-like protein
Computational
Description (TAIR10)
powdery mildew resistant 6 (PMR6); CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G04310.1); Has 2753 Blast hits to 2553 proteins in 415 species: Archae - 3; Bacteria - 1039; Metazoa - 313; Fungi - 409; Plants - 814; Viruses - 7; Other Eukaryotes - 168 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G54920-MONOMERBioGrid:9973CAZy:PL1EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410IGFPEMBL:AF534079
EMBL:AL049655EMBL:AY058870EMBL:AY074331EMBL:AY096739EMBL:CP002686EnsemblPlants:AT3G54920EnsemblPlants:AT3G54920.1
entrez:824657Gene3D:2.160.20.10GeneID:824657Genevisible:Q93Z04GO:GO:0009814GO:GO:0030570GO:GO:0031225
GO:GO:0042547GO:GO:0045490GO:GO:0046658GO:GO:0046872Gramene:AT3G54920.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF11
HOGENOM:HOG000237948InParanoid:Q93Z04InterPro:IPR002022InterPro:IPR011050InterPro:IPR012334InterPro:IPR018082KEGG:00040+4.2.2.2
KEGG:ath:AT3G54920KO:K01728OMA:SAVHITGPaxDb:Q93Z04Pfam:PF00544Pfam:Q93Z04PhylomeDB:Q93Z04
PIR:T06728PRINTS:PR00807PRO:PR:Q93Z04ProteinModelPortal:Q93Z04Proteomes:UP000006548RefSeq:NP_191052.2SMART:SM00656
SMR:Q93Z04STRING:3702.AT3G54920.1SUPFAM:SSF51126TAIR:AT3G54920tair10-symbols:PMR6UniGene:At.3109UniPathway:UPA00545
UniProt:Q93Z04
Coordinates (TAIR10) chr3:+:20345311..20348477
Molecular Weight (calculated) 53932.00 Da
IEP (calculated) 6.45
GRAVY (calculated) -0.33
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLQNFSNTI FLLCLFFTLL SATKPLNLTL PHQHPSPDSV ALHVIRSVNE SLARRQLSSP SSSSSSSSSS SSSSCRTGNP IDDCWRCSDA DWSTNRQRLA
101: DCSIGFGHGT LGGKNGKIYV VTDSSDNNPT NPTPGTLRYG VIQEEPLWIV FSSNMLIRLK QELIINSYKT LDGRGSAVHI TGNGCLTLQY VQHIIIHNLH
201: IYDCKPSAGF EKRGRSDGDG ISIFGSQKIW VDHCSMSHCT DGLIDAVMGS TAITISNNYF THHDEVMLLG HDDNYAPDTG MQVTIAFNHF GQGLVQRMPR
301: CRRGYIHVVN NDFTEWKMYA IGGSGNPTIN SQGNRYSAPS DPSAKEVTKR VDSKDDGEWS NWNWRTEGDL MENGAFFVAS GEGMSSMYSK ASSVDPKAAS
401: LVDQLTRNAG VFGGPRDDQG QSGNSYSPYG GDGGGGGSSG GSSGGGMDVM GGTTRGSSSS SGDDSNVFQM IFGSDAPSRP RLTLLFSLLM ISVLSLSTLL
501: L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)