AT3G54870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Armadillo/beta-catenin repeat family protein / kinesin motor family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Armadillo-repeat containing kinesin-related protein. Plays a role during transition to root-hair tip growth.Mutants have short, branched root hairs and an excess of endoplasmic microtubles. Phenotype suggests ARK1 plays a role in modulating microtubule depolymerization during root hair tip growth. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MORPHOGENESIS OF ROOT HAIR 2 (MRH2); FUNCTIONS IN: microtubule binding, actin binding, microtubule motor activity; INVOLVED IN: root hair cell tip growth, root hair cell differentiation, regulation of microtubule polymerization or depolymerization; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1); Has 140801 Blast hits to 75642 proteins in 3085 species: Archae - 1274; Bacteria - 19600; Metazoa - 61665; Fungi - 11208; Plants - 7696; Viruses - 409; Other Eukaryotes - 38949 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20330806..20335823 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 105201.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 941 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSNSSSAV RSSAKHAAER IQQHLPPNSN HAVSLSSSSL NLPARTSIVA PGIAHSSRLK DRPSASSSSS SSSVSASSPS TRRSGTPVRR SQSKDFDDDN 101: DPGRVRVSVR VRPRNGEELI SDADFADLVE LQPEIKRLKL RKNNWNSESY KFDEVFTDTA SQKRVYEGVA KPVVEGVLSG YNGTIMAYGQ TGTGKTYTVG 201: KIGKDDAAER GIMVRALEDI LLNASSASIS VEISYLQLYM ETIQDLLAPE KNNISINEDA KTGEVSVPGA TVVNIQDLDH FLQVLQVGET NRHAANTKMN 301: TESSRSHAIL TVYVRRAMNE KTEKAKPESL GDKAIPRVRK SKLLIVDLAG SERINKSGTD GHMIEEAKFI NLSLTSLGKC INALAEGSSH IPTRDSKLTR 401: LLRDSFGGSA RTSLIITIGP SARYHAETTS TIMFGQRAMK IVNMVKLKEE FDYESLCRKL ETQVDHLTAE VERQNKLRNS EKHELEKRLR ECENSFAEAE 501: KNAVTRSKFL EKENTRLELS MKELLKDLQL QKDQCDLMHD KAIQLEMKLK NTKQQQLENS AYEAKLADTS QVYEKKIAEL VQRVEDEQAR STNAEHQLTE 601: MKNILSKQQK SIHEQEKGNY QYQRELAETT HTYESKIAEL QKKLEGENAR SNAAEDQLRQ MKRLISDRQV ISQENEEANE LKIKLEELSQ MYESTVDELQ 701: TVKLDYDDLL QQKEKLGEEV RDMKERLLLE EKQRKQMESE LSKLKKNLRE SENVVEEKRY MKEDLSKGSA ESGAQTGSQR SQGLKKSLSG QRATMARLCE 801: EVGIQKILQL IKSEDLEVQI QAVKVVANLA AEEANQVKIV EEGGVEALLM LVQSSQNSTI LRVASGAIAN LAMNEKSQDL IMNKGGAQLL AKMVTKTDDP 901: QTLRMVAGAL ANLCGNGKHK IKNFASDDFQ YSLYNLCVKI Y |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)