suba logo
AT3G54850.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plant U-box 14
Curator
Summary (TAIR10)
Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro.
Computational
Description (TAIR10)
plant U-box 14 (PUB14); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 13 (TAIR:AT3G46510.1); Has 7501 Blast hits to 4963 proteins in 297 species: Archae - 2; Bacteria - 29; Metazoa - 1804; Fungi - 795; Plants - 4036; Viruses - 3; Other Eukaryotes - 832 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2833-MONOMERBioGrid:9966EC:6.3.2.-eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:AL049655EMBL:AY065279
EMBL:AY096530EMBL:CP002686EnsemblPlants:AT3G54850EnsemblPlants:AT3G54850.1entrez:824650EvolutionaryTrace:Q8VZ40Gene3D:1.25.10.10
Gene3D:3.30.40.10GeneID:824650Genevisible:Q8VZ40GO:GO:0004842GO:GO:0016874GO:GO:0070696Gramene:AT3G54850.1
hmmpanther:PTHR23315hmmpanther:PTHR23315:SF111HOGENOM:HOG000238412InParanoid:Q8VZ40IntAct:Q8VZ40InterPro:IPR000225InterPro:IPR003613
InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024KEGG:ath:AT3G54850OMA:AKRNVNNPaxDb:Q8VZ40PDB:1T1H
PDBsum:1T1HPfam:PF00514Pfam:PF04564Pfam:Q8VZ40Pfscan:PS50176Pfscan:PS51698PhylomeDB:Q8VZ40
PIR:T06735PRIDE:Q8VZ40PRO:PR:Q8VZ40PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:Q8VZ40Proteomes:UP000006548
RefSeq:NP_191045.2SMART:SM00185SMART:SM00504SMR:Q8VZ40STRING:3702.AT3G54850.1SUPFAM:SSF48371SUPFAM:SSF57850
TAIR:AT3G54850tair10-symbols:ATPUB14tair10-symbols:PUB14UniGene:At.28098UniPathway:UPA00143UniProt:Q8VZ40
Coordinates (TAIR10) chr3:+:20321524..20323848
Molecular Weight (calculated) 69401.10 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.15
Length 632 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)