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AT3G54826.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At3g54826-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Zim17-type zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zim17-type zinc finger protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); Has 403 Blast hits to 403 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 127; Plants - 101; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121WIeggNOG:KOG3277EMBL:CP002686EnsemblPlants:AT3G54826EnsemblPlants:AT3G54826.1entrez:2745966GeneID:2745966
GO:GO:0005739GO:GO:0006457GO:GO:0008270GO:GO:0030150GO:GO:0050821GO:GO:0051087Gramene:AT3G54826.1
hmmpanther:PTHR20922hmmpanther:PTHR20922:SF13InParanoid:F4JE34IntAct:F4JE34InterPro:IPR007853InterPro:IPR024158KEGG:ath:AT3G54826
KO:K17808MINT:MINT-8386098OMA:PATAYEEPANTHER:PTHR20922PaxDb:F4JE34Pfam:PF05180Pfscan:PS51501
PRIDE:F4JE34PROSITE:PS51501ProteinModelPortal:F4JE34Proteomes:UP000006548RefSeq:NP_974434.2SMR:F4JE34STRING:3702.AT3G54826.1
TAIR:AT3G54826UniGene:At.47899UniProt:F4JE34
Coordinates (TAIR10) chr3:+:20310354..20311652
Molecular Weight (calculated) 25005.00 Da
IEP (calculated) 9.03
GRAVY (calculated) -0.29
Length 223 amino acids
Sequence (TAIR10)
(BLAST)
001: MIKKASFIVL RFQNFTENRS VEFLLSLRLS MAARLLALRR ALSLFSNQQH RFPLSQVSTE QLSLSNSLFS RSHVYGRLFQ RQLSVIREAN EASVTNVCNS
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)