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AT3G54810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant-specific GATA-type zinc finger transcription factor family protein
Curator
Summary (TAIR10)
Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified.
Computational
Description (TAIR10)
BLUE MICROPYLAR END 3 (BME3); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 11 (TAIR:AT1G08010.2); Has 1480 Blast hits to 1450 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 544; Plants - 806; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AF412107EMBL:AL049655
EMBL:AL138650EMBL:AY078029EMBL:CP002686EnsemblPlants:AT3G54810
EnsemblPlants:AT3G54810.1EnsemblPlants:AT3G54810.2entrez:824646ExpressionAtlas:Q9SV30
Gene3D:3.30.50.10GeneID:824646Genevisible:Q9SV30GO:GO:0000977
GO:GO:0001085GO:GO:0001228GO:GO:0003682GO:GO:0003700
GO:GO:0005634GO:GO:0005667GO:GO:0006366GO:GO:0007623
GO:GO:0008270GO:GO:0009845GO:GO:0030154GO:GO:0045944
Gramene:AT3G54810.1Gramene:AT3G54810.2hmmpanther:PTHR10071hmmpanther:PTHR10071:SF194
HOGENOM:HOG000238267InParanoid:Q9SV30InterPro:IPR000679InterPro:IPR013088
InterPro:IPR016679KEGG:ath:AT3G54810OMA:YITEENDPaxDb:Q9SV30
Pfam:PF00320Pfam:Q9SV30Pfscan:PS50114PhylomeDB:Q9SV30
PIR:T06739PIRSF:PIRSF016992PRIDE:Q9SV30PRO:PR:Q9SV30
PROSITE:PS00344PROSITE:PS50114ProteinModelPortal:Q9SV30Proteomes:UP000006548
RefSeq:NP_191041.1RefSeq:NP_850704.1scanprosite:PS00344SMART:SM00401
SMR:Q9SV30STRING:3702.AT3G54810.1SUPFAM:SSF57716TAIR:AT3G54810
tair10-symbols:BME3tair10-symbols:BME3-ZFtair10-symbols:GATA8UniGene:At.23953
UniProt:B9DHF1UniProt:Q9SV30
Coordinates (TAIR10) chr3:+:20296957..20298236
Molecular Weight (calculated) 35630.40 Da
IEP (calculated) 6.71
GRAVY (calculated) -0.74
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGTSFPEDL DCGNFFDNMD DLMDFPGGDI DVGFGIGDSD SFPTIWTTHH DTWPAASDPL FSSNTNSDSS PELYVPFEDI VKVERPPSFV EETLVEKKED
101: SFSTNTDSSS SHSQFRSSSP VSVLESSSSS SQTTNTTSLV LPGKHGRPRT KRPRPPVQDK DRVKDNVCGG DSRLIIRIPK QFLSDHNKMI NKKKKKKAKI
201: TSSSSSSGID LEVNGNNVDS YSSEQYPLRK CMHCEVTKTP QWRLGPMGPK TLCNACGVRY KSGRLFPEYR PAASPTFTPA LHSNSHKKVA EMRNKRCSDG
301: SYITEENDLQ GLIPNNAYIG VD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)