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AT3G54800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.876
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pleckstrin homology (PH) and lipid-binding START domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pleckstrin homology (PH) and lipid-binding START domains-containing protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) and lipid-binding START domains-containing protein (TAIR:AT2G28320.1); Has 535 Blast hits to 513 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 0; Plants - 352; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JBD8eggNOG:ENOG41116PKEMBL:AK317320EMBL:CP002686EnsemblPlants:AT3G54800EnsemblPlants:AT3G54800.1EnsemblPlants:AT3G54800.2
entrez:824645Gene3D:2.30.29.30Gene3D:3.30.530.20GeneID:824645GO:GO:0008289Gramene:AT3G54800.1Gramene:AT3G54800.2
hmmpanther:PTHR12136hmmpanther:PTHR12136:SF56HOGENOM:HOG000005741InterPro:IPR001849InterPro:IPR002913InterPro:IPR009769InterPro:IPR011993
InterPro:IPR023393KEGG:ath:AT3G54800OMA:HNEEPERPfam:PF00169Pfam:PF01852Pfam:PF07059Pfscan:PS50003
Pfscan:PS50848PhylomeDB:B9DGX7PROSITE:PS50003PROSITE:PS50848Proteomes:UP000006548RefSeq:NP_001030862.1RefSeq:NP_191040.2
SMART:SM00233SMART:SM00234STRING:3702.AT3G54800.1SUPFAM:SSF50729SUPFAM:SSF55961TAIR:AT3G54800UniGene:At.35078
UniProt:B9DGX7
Coordinates (TAIR10) chr3:+:20286378..20289880
Molecular Weight (calculated) 83286.10 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.42
Length 733 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVSQTDGRM EGWLYTIRHN RFGLQFSRKR YFVLHENNLT SFKSVPSDHN EEPERRASLD CCIRVTDNGR ESFHRKILFI FTLYNTSNHL DQLKLGASSP
101: EEAAKWIRSL QDASQKGFPI PDCEFFVSHA EKGLVKLDVS KRNRRKNSVD WTNYSSTNYS STSLNVETNV APDVIAPSPW KIFGCQNGLR LFKEAKDWDS
201: RGRHWDDHPA IMAVGVIDGT SEDIFNTLMS LGPLRSEWDF CFYKGNVVEH LDGHTDIIHL QLYSDWLPWG MNRRDLLLRR YWRREDDGTY VILCHSVYHK
301: NCPPKKGYVR ACVKSGGYVV TPANNGKQSL VKHMVAIDWR SWNLYMRPSS ARSITIRVVE RVAALREMFK AKQGHGFTEF VSGEFLDTKP CLSKINTMPL
401: KTEAKEVDLE TMHAEEMDKP TSARNSLMDL NDASDEFFDV PEPNESTEFD SFIDSSPYSQ GHQLKIPTPA GIVKKLQDLA INKKGYMDLQ EVGLEENNTF
501: FYGATLQKDP SLTLPCSWST ADPSTFLIRG NNYLKNQQKV KAKGTLMQMI GADWISSDKR EDDLGGRIGG LVQEYAAKGS PEFFFIVNIQ VPGSAMYSLA
601: LYYMLKTPLE EHPLLESFVN GDDAYRNSRF KLIPHISKGS WIVKQSVGKK ACLVGQVLEV CYTRGKNYLE LDIDVGSSTV ARGVTNLVLG YLNNLVIEMA
701: FLIQANTVEE LPELLLGTCR LNYLDVSKSV KER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)