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AT3G54790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.536
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.1); Has 7024 Blast hits to 4442 proteins in 284 species: Archae - 0; Bacteria - 30; Metazoa - 1370; Fungi - 570; Plants - 4306; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410ITKUeggNOG:ENOG410ZA6HEMBL:AK118613EMBL:AL138650EMBL:CP002686EnsemblPlants:AT3G54790
EnsemblPlants:AT3G54790.1entrez:824644ExpressionAtlas:Q8GWV5Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:824644Genevisible:Q8GWV5
GO:GO:0004842GO:GO:0016874hmmpanther:PTHR23315hmmpanther:PTHR23315:SF119HOGENOM:HOG000238412InParanoid:Q8GWV5InterPro:IPR000225
InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024ncoils:CoilOMA:NDRAKENPaxDb:Q8GWV5
Pfam:PF00514Pfam:PF04564Pfam:Q8GWV5Pfscan:PS50176Pfscan:PS51698PhylomeDB:Q8GWV5PIR:T47638
PRIDE:Q8GWV5PRO:PR:Q8GWV5PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:Q8GWV5Proteomes:UP000006548RefSeq:NP_191039.2
SMART:SM00185SMART:SM00504SMR:Q8GWV5STRING:3702.AT3G54790.1SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT3G54790
UniGene:At.1218UniGene:At.48768UniPathway:UPA00143UniProt:Q8GWV5
Coordinates (TAIR10) chr3:-:20281830..20284363
Molecular Weight (calculated) 83783.50 Da
IEP (calculated) 6.16
GRAVY (calculated) -0.19
Length 760 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)