suba logo
AT3G54770.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, gynoecium, carpel, stamen; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76460.1); Has 10710 Blast hits to 8449 proteins in 510 species: Archae - 0; Bacteria - 384; Metazoa - 5849; Fungi - 946; Plants - 2782; Viruses - 0; Other Eukaryotes - 749 (source: NCBI BLink).
Protein Annotations
DNASU:824642eggNOG:ENOG4111PGTeggNOG:KOG0149EMBL:AK230287EMBL:AL138650EMBL:AY084706EMBL:CP002686
EnsemblPlants:AT3G54770EnsemblPlants:AT3G54770.1entrez:824642ExpressionAtlas:Q9M1S3Gene3D:3.30.70.330GeneID:824642Genevisible:Q9M1S3
GO:GO:0000166GO:GO:0003723GO:GO:0005634GO:GO:0009414GO:GO:0009651GO:GO:0009737GO:GO:0010029
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF421InParanoid:Q9M1S3InterPro:IPR000504InterPro:IPR012677OMA:THKEAMYPaxDb:Q9M1S3
Pfam:PF00076Pfam:Q9M1S3Pfscan:PS50102PhylomeDB:Q9M1S3PIR:T47636PRIDE:Q9M1S3PRO:PR:Q9M1S3
PROSITE:PS50102ProteinModelPortal:Q9M1S3Proteomes:UP000006548RefSeq:NP_191037.1SMART:SM00360SMR:Q9M1S3STRING:3702.AT3G54770.1
SUPFAM:SSF54928TAIR:AT3G54770UniGene:At.20812UniProt:Q9M1S3
Coordinates (TAIR10) chr3:-:20273863..20275827
Molecular Weight (calculated) 28859.10 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.62
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)