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AT3G54750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 145 Blast hits to 145 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEYNeggNOG:ENOG410ZEEQEMBL:AK118215EMBL:AK317433EMBL:CP002686EnsemblPlants:AT3G54750EnsemblPlants:AT3G54750.1
EnsemblPlants:AT3G54750.2entrez:824640ExpressionAtlas:Q8GXI8GeneID:824640Gramene:AT3G54750.1Gramene:AT3G54750.2hmmpanther:PTHR12972
HOGENOM:HOG000085135InterPro:IPR024861PANTHER:PTHR12972PhylomeDB:Q8GXI8PRINTS:PR02064Proteomes:UP000006548RefSeq:NP_191035.2
RefSeq:NP_850703.1STRING:3702.AT3G54750.3TAIR:AT3G54750UniGene:At.46077UniProt:Q8GXI8
Coordinates (TAIR10) chr3:-:20264833..20268416
Molecular Weight (calculated) 65230.60 Da
IEP (calculated) 7.29
GRAVY (calculated) -0.37
Length 589 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKVVAKRKT PSELRGEQLK RTAFVDQAKE AFDALRPCKS AERENGFKKS ELSKNPKYIE MRMDELYPVK KARPWMLSGK ENSKENGAKQ SSSLINVSLL
101: SNLAATKRQL IREENNASTE VPDDTKAEAR QTNERCSQSI FRSVTQLSTR GEELSCLPDI DMNKALKGLA TCEPLLVHPG DITGEDDTAS LSGSFMSEFQ
201: VSGQKIPLDL SLKTYARLVS SSPLSWLHRS IMGSTYNGMP QLKSLSCNVV NQDNSSGSGA SVVSQVLNSM SLHSWVYPQS TLPPFVISAM VASVSDRGEV
301: DFLQKRKLAW EDAFRSLYFM FRKNLCKVFY VCTSQFVAMF TGSCESGGAK RSCNGYITQS TRRLRAMLKN LDICYSMPLC KTKMDQTTVE DLAELSELEN
401: HNIGQIRRSR SVSNIDNTPE SFLAFVGNES VHGLYDLLLN YRYSFEFLPT ADVPVLSSPV PFQNAALSSP EIKCSEMVKT EHTSCYMVEI KGEYIPPWII
501: SNICANVGAN GQNFEASFVT EPTSVNLNIG LPQVPEKTDP ESRVIEGTGE TNDNASDIPG SVICPQLQSG HLKNLKYCNK SYTVSLSPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)