AT3G54680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : proteophosphoglycan-related | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
proteophosphoglycan-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 4120 Blast hits to 443 proteins in 120 species: Archae - 2; Bacteria - 57; Metazoa - 120; Fungi - 93; Plants - 84; Viruses - 11; Other Eukaryotes - 3753 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20244568..20245689 | ||||||||||||||||||||
| Molecular Weight (calculated) | 22752.60 Da | ||||||||||||||||||||
| IEP (calculated) | 11.49 | ||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||
| Length | 211 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAARANNKYT SINFNHILHK DPPSSSSSSS SASYSSVARS NGRMLVLTKS SPKPLRSPSA APTTTTTAPP ISTAPRIPSN QAISDPDPSQ ISLRPLGHTG 101: SSSSLSFPIR TPEINKAPEV NAPTPVSLSP KPDRFVPPHL RPGFVRKDEK PGLNSSRVRD PNPNLNQRLP NQEQPRQEYF GYGQPGRPKS GGYERIRTDP 201: RITGNRPGTS G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)