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AT3G54560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : histone H2A 11
Curator
Summary (TAIR10)
Encodes HTA11, a histone H2A protein.
Computational
Description (TAIR10)
histone H2A 11 (HTA11); FUNCTIONS IN: DNA binding; INVOLVED IN: flower development, detection of temperature stimulus, defense response to bacterium; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 8 (TAIR:AT2G38810.2); Has 3864 Blast hits to 3859 proteins in 326 species: Archae - 0; Bacteria - 0; Metazoa - 2525; Fungi - 296; Plants - 612; Viruses - 2; Other Eukaryotes - 429 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5262eggNOG:KOG1757EMBL:AK228050EMBL:Y12575EnsemblPlants:AT3G54560EnsemblPlants:AT3G54560.1entrez:824621
ExpressionAtlas:O23628ExpressionAtlas:Q0WS87Gene3D:1.10.20.10GeneID:824621GO:GO:0000786GO:GO:0003677GO:GO:0005634
Gramene:AT3G54560.1hmmpanther:PTHR23430hmmpanther:PTHR23430:SF76InterPro:IPR002119InterPro:IPR007125InterPro:IPR009072InterPro:IPR032454
KEGG:ath:AT3G54560KO:K11251OMA:VYVASIMPaxDb:Q0WS87Pfam:O23628Pfam:PF00125Pfam:PF16211
PhylomeDB:Q0WS87PIR:T47615PRIDE:Q0WS87PRINTS:PR00620ProteinModelPortal:Q0WS87RefSeq:NP_191019.1SMART:SM00414
SMR:O23628SMR:Q0WS87STRING:3702.AT3G54560.1SUPFAM:SSF47113TAIR:AT3G54560tair10-symbols:HTA11UniGene:At.78
UniProt:O23628UniProt:Q0WS87
Coordinates (TAIR10) chr3:+:20196532..20197466
Molecular Weight (calculated) 14541.90 Da
IEP (calculated) 11.05
GRAVY (calculated) -0.34
Length 136 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)