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AT3G54520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54530.1); Has 72 Blast hits to 70 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 8; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUBTeggNOG:ENOG411070YEMBL:AY630780EMBL:AY924794
EMBL:CP002686EnsemblPlants:AT3G54520EnsemblPlants:AT3G54520.1entrez:824617
GeneID:824617Gramene:AT3G54520.1HOGENOM:HOG000142262KEGG:ath:AT3G54520
ncoils:CoilOMA:HLEKKCEPhylomeDB:Q6DYC5Proteomes:UP000006548
RefSeq:NP_191016.2TAIR:AT3G54520UniGene:At.50854UniProt:Q6DYC5
Coordinates (TAIR10) chr3:-:20183746..20185173
Molecular Weight (calculated) 34987.80 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.98
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MEASTQLNGV NEISKSIGIV GNYDEMGLGK LYRDKLSPDA DPVVHMSVSK AEKRLKKLER DYQHTYENYN EIRSNRYRFY IEAKHSTYRS RQAGNCIKYY
101: NNLREQLQNN LDKLKKAEET QRGVEKPDHC KRVSMQHGCK SLTQEKRILQ LIGERQQQHL ENNDLGQETI HFTKISWEFD YSQSKIPKSS NSKTVHNLLR
201: RFKDTEKLKD KAVANGELVN NPTSQDNLTI SIEMEIKLLT KVIKKLERER GIETRTDYGH EEKIKHLEKK CEMICGKWDE EKKYIVGLKN IHDGLVISL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)