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AT3G54500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXKJeggNOG:ENOG410YI0TEMBL:AL138656EMBL:CP002686EnsemblPlants:AT3G54500EnsemblPlants:AT3G54500.1EnsemblPlants:AT3G54500.2
EnsemblPlants:AT3G54500.3EnsemblPlants:AT3G54500.4entrez:824615ExpressionAtlas:F4JCX9GeneID:824615GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0048511hmmpanther:PTHR33334hmmpanther:PTHR33334:SF1HOGENOM:HOG000177932InParanoid:F4JCY0KEGG:ath:AT3G54500
ncoils:CoilOMA:RLDMESWPaxDb:F4JCX8PaxDb:F4JCY0PaxDb:Q9M1H7PIR:T47609PRIDE:F4JCX8
ProteinModelPortal:F4JCX9Proteomes:UP000006548RefSeq:NP_001190088.1RefSeq:NP_001190089.1RefSeq:NP_191014.2RefSeq:NP_974432.2TAIR:AT3G54500
UniGene:At.1460UniGene:At.71274UniProt:F4JCX8
Coordinates (TAIR10) chr3:-:20175792..20178737
Molecular Weight (calculated) 71659.90 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.78
Length 648 amino acids
Sequence (TAIR10)
(BLAST)
001: MFDWEEEELT NMIWGDDAET GDHIVPFKVR SEQLNKKEQI EESKTAEQKI TGTKIDLHDK NLGSSSSHNV DEGLPQPDFC MSSWPDTSLT NATKVDQDLS
101: ATELSKCLAE PVRYDSTREK TSELGKGPDI FHSSDESKEQ GDFDDYSWAN IGSFDDLDRM FSNDVPIFGD GSLSGGDELW SSSKDVSNSP KSLSSMLDSQ
201: DLGLDIRTEF EQQENQQFPL TGKANGLSSQ SVPSVRVTLK ADQYREHKGQ PSVEDQPYQQ NKMMKFSKMP GTSEARPFQE LYGQRIPFSN SAGKCVNQLA
301: PPQSSLMAVN LLSESEGSGT SHYSHMPNQY MANSAFGNLA NPYSSVPVIS AVQHPDVRNQ LMHPSYNPAT ATSVNMATDA SARPSTMTPQ EKLEKLRRRQ
401: QMQAMLAIQR QQQQFSHQVP VADQSITQNC LQDIPLQLVD KTNLQGLTAM PSFDPSSSLE QDDSGKFAAA VDNSAEFAVL YRLQDVVAKL DMGTRTCIRD
501: SLFRLAGSAA QRHYTSDTSH SNKTSQDDQE VIPREESRYR YAGMPDTEAV TNPTDRTVAH LLFHRPFDML AAKRMEGPES PASSKMGTEE KGNFPKCSIR
601: ETHLTKQKAQ KEEGPADSLA LGNAPNSGSS STVGERVVEA SQGNKRKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)