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AT3G54430.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.620
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SHI-related sequence 6
Curator
Summary (TAIR10)
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
Computational
Description (TAIR10)
SHI-related sequence 6 (SRS6); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT5G12330.4); Has 173 Blast hits to 173 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:9925eggNOG:ENOG410JX57eggNOG:ENOG41104ACEMBL:AF446889
EMBL:AL132971EMBL:AY052675EMBL:CP002686EnsemblPlants:AT3G54430
EnsemblPlants:AT3G54430.1entrez:824609GeneID:824609Genevisible:Q9M2U4
GO:GO:0003677GO:GO:0005634GO:GO:0007275GO:GO:0009734
GO:GO:0009851GO:GO:0046872Gramene:AT3G54430.1hmmpanther:PTHR31604
HOGENOM:HOG000242956InParanoid:Q9M2U4InterPro:IPR006510InterPro:IPR006511
InterPro:IPR007818KEGG:ath:AT3G54430OMA:WIPSSATPaxDb:Q9M2U4
Pfam:PF05142Pfam:Q9M2U4PhylomeDB:Q9M2U4PIR:T47602
PRIDE:Q9M2U4PRO:PR:Q9M2U4Proteomes:UP000006548RefSeq:NP_191011.1
STRING:3702.AT3G54430.1TAIR:AT3G54430tair10-symbols:SRS6TIGRfam:TIGR01623
TIGRfam:TIGR01624TIGRFAMs:TIGR01623TIGRFAMs:TIGR01624UniGene:At.26489
UniProt:Q9M2U4
Coordinates (TAIR10) chr3:-:20147224..20147851
Molecular Weight (calculated) 20327.40 Da
IEP (calculated) 10.30
GRAVY (calculated) -0.54
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MLGLRNIILL SPPPTQITRP SLPPVNFAAV EDNNTVGEKV CRDCGNRAKK ECLFERCRTC CKSRGYNCVT HVKSTWIPSS ATRSSSSPSE RKKKLKIDKQ
101: SSPNVSLLPT TTSRQERGFR EGLPGKIEAP AVFKRTRVTA ISNNEQAEIG YQATVTISGH IFKGFLHYYG VDHNKAFPCL SQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)