suba logo
AT3G54390.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G10030.1); Has 350 Blast hits to 341 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 343; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IN2KeggNOG:ENOG410YK9ZEMBL:AL132971EMBL:AY084391EMBL:AY140041EMBL:BT006322EMBL:CP002686
EnsemblPlants:AT3G54390EnsemblPlants:AT3G54390.1entrez:824605GeneID:824605GO:GO:0003700GO:GO:0006355Gramene:AT3G54390.1
hmmpanther:PTHR31307hmmpanther:PTHR31307:SF7HOGENOM:HOG000243300IntAct:Q9M2U8KEGG:ath:AT3G54390ncoils:CoilOMA:IPKEDGF
Pfam:PF13837PhylomeDB:Q9M2U8PIR:T47598Proteomes:UP000006548RefSeq:NP_191007.1STRING:3702.AT3G54390.1TAIR:AT3G54390
UniGene:At.35113UniProt:Q9M2U8
Coordinates (TAIR10) chr3:-:20137912..20138863
Molecular Weight (calculated) 33282.60 Da
IEP (calculated) 10.06
GRAVY (calculated) -0.89
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MENGESNQEN LKSLNHDESL KKPSASSVVV DRLKRDEWSE GAVSTLLEAY ESKWVLRNRA KLKGQDWEDV AKHVSSRATH TKSPKTQTQC KNKIESMKKR
101: YRSESATADG SSWPLYPRLD HLLRGTQPQP QPQAVLPLNC SVPLLLLEPP LPAVAHPPQI SYGSNGVGKI PKEDGFKPEN KPEKDAEMDT DSSTPVVKTK
201: VRGKKVKRRY KEEKEEIAGS IRWLAEVVMR SERARMETMK EIERMRAEAE AKRGELDLKR TEIMANTQLE IARIFAAAAS SGQNKGVDSS LRIGRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)