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AT3G54260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 36
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 36 (TBL36); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 43 (TAIR:AT2G30900.1); Has 1361 Blast hits to 1313 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:9910eggNOG:ENOG410IKDCeggNOG:ENOG410YEHDEMBL:AL132957EMBL:AY054634EMBL:AY081518EMBL:CP002686
EnsemblPlants:AT3G54260EnsemblPlants:AT3G54260.1entrez:824593GeneID:824593Genevisible:Q940H3GO:GO:0005794GO:GO:0016021
GO:GO:0016413GO:GO:0071554Gramene:AT3G54260.1hmmpanther:PTHR32285hmmpanther:PTHR32285:SF52HOGENOM:HOG000238066InParanoid:Q940H3
InterPro:IPR025846InterPro:IPR026057InterPro:IPR029962KEGG:ath:AT3G54260OMA:SSWDYYMPANTHER:PTHR32285PaxDb:Q940H3
Pfam:PF13839Pfam:PF14416Pfam:Q940H3PhylomeDB:Q940H3PIR:T47585PRIDE:Q940H3PRO:PR:Q940H3
Proteomes:UP000006548RefSeq:NP_566996.1TAIR:AT3G54260tair10-symbols:TBL36UniGene:At.23580UniProt:Q940H3
Coordinates (TAIR10) chr3:-:20085097..20086745
Molecular Weight (calculated) 44373.30 Da
IEP (calculated) 9.02
GRAVY (calculated) -0.46
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSETRVLF LSLCLILGKV VLSQFDELWL VGDDDPLNAL QTRRERREER CDYSVGKWTF DETYPLYDSS CPYLSSALSC QRNGRPDSYY QKWRWIPKAC
101: SLPRFDALKF LGKMRGKRIM LVGDSMMRNQ WESLVCLVQS VLPTHRKKLT YNGPTMSFHS LDFETSIEFC WAPLLVELKR GVDRKRVLHL DSIEDNARYW
201: RGVDVLVFDS AHWWTHSQRW SSWDYYMDGN KIFKAMDPMV AYERGLTTWA KWVEINLDPS KTKVIFRTVS PRESGQMCYN QKHPLPSLSS STKPHVPQQS
301: RVLNKVLRTM KYRVYLYDIT TMSAYRRDGH PSVFKRAMHE EEKHHRIAGP SSDCSHWCLP GVPDIWNEML SSIILTNAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)