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AT3G54230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : suppressor of abi3-5
Curator
Summary (TAIR10)
Encodes a splicing factor SUA (suppressor of abi3-5), homologous to the human protein RBM5. Controls alternative splicing of the developmental regulator ABI3.
Computational
Description (TAIR10)
suppressor of abi3-5 (SUA); FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), D111/G-patch (InterPro:IPR000467), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 996294 Blast hits to 498601 proteins in 22091 species: Archae - 21896; Bacteria - 611740; Metazoa - 183692; Fungi - 26269; Plants - 56661; Viruses - 72133; Other Eukaryotes - 23903 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YNFQeggNOG:KOG0154EMBL:AL132957EMBL:AY070066EMBL:AY096433EMBL:CP002686EMBL:GU735482
EnsemblPlants:AT3G54230EnsemblPlants:AT3G54230.1EnsemblPlants:AT3G54230.2entrez:824590ExpressionAtlas:F4JCU0Gene3D:3.30.70.330Gene3D:4.10.1060.10
GeneID:824590GO:GO:0000166GO:GO:0003676GO:GO:0003723GO:GO:0005634GO:GO:0005681GO:GO:0006397
GO:GO:0008270GO:GO:0008380GO:GO:0043484hmmpanther:PTHR13948hmmpanther:PTHR13948:SF3HOGENOM:HOG000029810InParanoid:F4JCU0
IntAct:F4JCU0InterPro:IPR000467InterPro:IPR000504InterPro:IPR001876InterPro:IPR012677KEGG:ath:AT3G54230KO:K13094
OMA:ERDESPHPaxDb:F4JCU0PaxDb:Q9M383Pfam:PF00076Pfam:PF01585Pfscan:PS50102Pfscan:PS50174
Pfscan:PS50199PIR:T47582PRIDE:F4JCU0PROSITE:PS01358PROSITE:PS50102PROSITE:PS50174PROSITE:PS50199
ProteinModelPortal:F4JCU0Proteomes:UP000006548Reactome:R-ATH-72163RefSeq:NP_001190084.1RefSeq:NP_190991.2scanprosite:PS01358SMART:SM00360
SMART:SM00443SMART:SM00547STRING:3702.AT3G54230.2SUPFAM:SSF54928SUPFAM:SSF90209TAIR:AT3G54230tair10-symbols:SUA
UniGene:At.28660UniProt:Q8VYR8
Coordinates (TAIR10) chr3:+:20073872..20080142
Molecular Weight (calculated) 112573.00 Da
IEP (calculated) 7.35
GRAVY (calculated) -1.06
Length 1007 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDPSRYGRQQ EWDNNSAPEG YGTQHDPNHR FGVSYDDGYP DERLMRDDVY NYPPGHNTLG DLPQSRKRNY EENYPSELRR QEKPYIDSNY AADYYHDSEA
0101: GSRNGHYRDH EHERSSRYDG CDDYSCNDNN YRSKNYHHSR DDGREKDYDY TRRSYDSEYE RASVRDGSRK SRDPQDRERN SRDREWDSRD REWDKRCYSR
0201: ERDESPHKRY EKSRSRSTGR GEFSRSRSPR GRSHGRSYRE DSYEGDHWNE SERRREYEDR HNQDHFSATP SATVVVKGLS MKSTEEDLYQ ILAEWGPLHH
0301: VRVIREQNSG ISRGFAFIDF PTVDAARTMM DRIEHDGIVL DGRKLMFHYS QPTGRAGVSR RQEHASRRSY GGSRNMIVPT DWICTICGCI NFARRTSCFQ
0401: CNEPKTKDSP SADVGLSNSA AGKRISETGP THVLVVRGLD EDADEEMLRY EFSKHAPIKD LRLVRDKFTH VSRGFAFVHF YSVEDATKAL EATNRTALER
0501: NGKILRVAYA KSVHGSGTGI SAPSHSNNLA AAAIEAATFS QQYDGVGWAP KEYNTGEKQN TGGQAQGVGE IESQKGTSAP QSGYVWDEAS GYYYDAASGY
0601: YYDGNSGLYY DSNSGLWYSY DQQTQQYVPC PDQNNESKVT ENQPDSAKKE KSSQQKVIIS AATTPNVEKV LSLPDAVQAA AAAAIASEKR EKERVKEIKL
0701: ASKTSLLASK KKMSNVLTMW KQRSHETQIQ RPSPSLGDNP PTVSAEARSS FSTGQSMGKL KSDVIIAKER STSNHGVSAL TTAESSSSST TGGTLMGVMR
0801: GSFGGTLGGA SSSASVQMPP ILPSASPASV SVSGSGRRRF SETPTAGPTH REQPQTSYRD RAAERRNLYG SSTSSGNDVI DSSEDLMGLR KGSSDPTPFP
0901: PGVGGRGITT STEVSSFDVI TEERAIDESN VGNRMLRNMG WHEGSGLGKD GSGMKEPVQA QGVDRRAGLG SQQKKVDAEF EVQPGDTYRT LLHKKALARF
1001: RDMSDNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)