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AT3G54220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Encodes a member of a novel family having similarity to DNA binding proteins containing basic-leucine zipper regions; scr is expressed in cortex/endodermal initial cells and in the endodermal cell lineage. Regulates the radial organization of the root. Is required cell-autonomously for distal specification of the quiescent center, which in turn regulates stem cell fate of immediately surrounding cells. SCR appears to be a direct target of SHR.
Computational
Description (TAIR10)
SCARECROW (SCR); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G41920.1); Has 4362 Blast hits to 4213 proteins in 491 species: Archae - 0; Bacteria - 22; Metazoa - 838; Fungi - 368; Plants - 2661; Viruses - 19; Other Eukaryotes - 454 (source: NCBI BLink).
Protein Annotations
BioGrid:9906eggNOG:ENOG410IIRYeggNOG:ENOG4110TCKEMBL:AL132957EMBL:AY056315EMBL:AY080840EMBL:AY113991
EMBL:CP002686EMBL:U62798EnsemblPlants:AT3G54220EnsemblPlants:AT3G54220.1entrez:824589GeneID:824589Genevisible:Q9M384
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0008356GO:GO:0009630GO:GO:0009956GO:GO:0043565
GO:GO:0048366GO:GO:0051457GO:GO:0090610Gramene:AT3G54220.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF12HOGENOM:HOG000238577
InParanoid:Q9M384IntAct:Q9M384InterPro:IPR005202KEGG:ath:AT3G54220ncoils:CoilOMA:EVKFESWPaxDb:Q9M384
Pfam:PF03514Pfam:Q9M384Pfscan:PS50985PhylomeDB:Q9M384PIR:T47581PIR:T51244PRIDE:Q9M384
PRO:PR:Q9M384PROSITE:PS50985ProteinModelPortal:Q9M384Proteomes:UP000006548RefSeq:NP_190990.1STRING:3702.AT3G54220.1TAIR:AT3G54220
tair10-symbols:SCRtair10-symbols:SGR1UniGene:At.71814UniGene:At.932UniProt:Q9M384
Coordinates (TAIR10) chr3:+:20070550..20072625
Molecular Weight (calculated) 71509.50 Da
IEP (calculated) 6.17
GRAVY (calculated) -0.40
Length 653 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)